PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00482g04027.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 242aa    MW: 27229.9 Da    PI: 9.3342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00482g04027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09156203455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Peinf101Scf00482g04027.1 156 SHSLAERVRRERISERMKVLQTLVPGC----DKVTGKALMLDEIINYVQSLQ 203
                               8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.08E-10150207No hitNo description
SuperFamilySSF474591.31E-17150220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-17152221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-7156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAAFQYQLHH LNSFHVDSVF IQGSNNIKMS GLLEEPNNTS TSTIVPNCIN SKSYQPESFI  60
LEMDSSSVID KREGVAQVNS MDRKRKSSEG SSNSMSSSQS KNVREGDHGK MQKKRNGHVI  120
TKEKKAKKDE KKLANDQEAP TGYIHVRARR GQATDSHSLA ERVRRERISE RMKVLQTLVP  180
GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLASLNPMY YDFGMELDTL MVRPDQGLVA  240
VC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6539241e-94HE653924.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-L gene), cultivar Samsun nn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311839.13e-91transcription factor bHLH137-like
RefseqXP_015164223.11e-91PREDICTED: transcription factor bHLH137, partial
SwissprotQ93W885e-53BH137_ARATH; Transcription factor bHLH137
TrEMBLA8TLW58e-90A8TLW5_CAPAN; BHLH transcription factor Upa20
TrEMBLM1CKP36e-90M1CKP3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000695689e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]