PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00500g00007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 298aa MW: 33836.1 Da PI: 6.4033

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00500g00007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.6	1.7e-55	6	132	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL++kv++ +++ ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+ Peinf101Scf00500g00007.1 6 LPPGFRFHPTDEELITYYLTNKVSNFNFTS-RAIADVDLNKCEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKT 89 79***********************999.89***********999999*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkdke++ +g lvg+kktLvfy+grapkgek++Wvmheyrle Peinf101Scf00500g00007.1 90 TGKDKEIFG-GGILVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 132 *****.******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-65	3	153	IPR003441	NAC domain
PROSITE profile	PS51005	60.035	6	152	IPR003441	NAC domain
Pfam	PF02365	9.5E-29	7	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEEINLPPGF RFHPTDEELI TYYLTNKVSN FNFTSRAIAD VDLNKCEPWD LPAKASMGEK 60 EWYFFSLKDR KYPTGLRTNR ATEAGYWKTT GKDKEIFGGG ILVGMKKTLV FYRGRAPKGE 120 KSNWVMHEYR LETKLGFKPS KEEWVLCRVF HKNSTVKKPQ QTSSSPQSEE SPCDTYTLAN 180 ELGDIDITSY NGLAIPSSGI ISNISLQNYN NTHDNIMNLN MNLADAREAT SLLSSNIPLV 240 NSLLFRASQF QSQDIPHFGI DLYPNFTVDA PSSSMVLDPV HVQQQQPHEQ SYKLDSNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-58	1	158	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-58	1	158	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-58	1	158	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-58	1	158	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-58	1	158	15	174	NAC domain-containing protein 19
3swm_B	2e-58	1	158	15	174	NAC domain-containing protein 19
3swm_C	2e-58	1	158	15	174	NAC domain-containing protein 19
3swm_D	2e-58	1	158	15	174	NAC domain-containing protein 19
3swp_A	2e-58	1	158	15	174	NAC domain-containing protein 19
3swp_B	2e-58	1	158	15	174	NAC domain-containing protein 19
3swp_C	2e-58	1	158	15	174	NAC domain-containing protein 19
3swp_D	2e-58	1	158	15	174	NAC domain-containing protein 19
4dul_A	1e-58	1	158	12	171	NAC domain-containing protein 19
4dul_B	1e-58	1	158	12	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763274.1	1e-141	PREDICTED: NAC domain-containing protein 77-like isoform X1
Refseq	XP_016442160.1	1e-141	PREDICTED: NAC domain-containing protein 79-like isoform X1
Swissprot	Q9FK44	6e-82	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1S3XQM1	1e-140	A0A1S3XQM1_TOBAC; NAC domain-containing protein 79-like isoform X1
TrEMBL	A0A1U7VLP9	1e-140	A0A1U7VLP9_NICSY; NAC domain-containing protein 77-like isoform X1
STRING	XP_009763274.1	1e-140	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-103	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]