PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00500g03012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 315aa    MW: 35002.9 Da    PI: 8.7896
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00500g03012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.87e-2946128382
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssa 82 
                               g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk ++WLl + k  i++l+ + +++as +   ++++  +++
  Peinf101Scf00500g03012.1  46 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVVDWLLDATKDDIDKLPPLHFPPASIShlfNPNTPYNMK 128
                               79*************************************************************88888555434222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.6247105IPR017887Transcription factor TCP subgroup
PfamPF036348.2E-2647131IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNSSKQEPGD TNKNKFSSSR ITPSSSRQSW ASFKNPRIVR VSRSFGGKDR HSKVCTIRGL  60
RDRRIRLSVP TAIQLYDLQE RLGLSQPSKV VDWLLDATKD DIDKLPPLHF PPASISHLFN  120
PNTPYNMKDG VKVADNFDDN MREKSTFGGK EKWIASSDEQ ENQEGSTIGG YVPLLSSQNF  180
FQLGNQSSLP AGMLNNTMQF NSNLSLAPFG NNSFSSQTES CQQNNFPTSL ASSNSFPSGQ  240
LYFCQNGTTL SSIVPPYMTT NNSQLNHFHL LNSSSPLVPT LQLISSKGLN SQEEDDHDNH  300
LPHKEGTGSY HLKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1852106155Putative transcription factor PCF6
5zkt_B4e-1852106155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593547.11e-115PREDICTED: transcription factor TCP17-like
RefseqXP_016468689.11e-115PREDICTED: transcription factor TCP17-like
TrEMBLA0A1S3ZWH21e-114A0A1S3ZWH2_TOBAC; transcription factor TCP17-like
STRINGXP_009593547.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5