PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00500g03031.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26570.5 Da    PI: 9.9799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00500g03031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.4e-30959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey++
  Peinf101Scf00500g03031.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAT 59
                              79***********************************************86 PP
2K-box108.76.7e-3679172598
                     K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                               + + ++++   sl+ e+akLk++ie Lqr+qRh++GedL+sLs+keLq+LeqqL++slk+iRs+Kn+l++e+i+elqkk k+lqe
  Peinf101Scf00500g03031.1  79 QLVPTDHSSPGSLNLEHAKLKARIEVLQRNQRHYMGEDLDSLSMKELQNLEQQLDSSLKHIRSRKNQLMHESISELQKKDKSLQE 163
                               555566677788999********************************************************************** PP

                     K-box  90 enkaLrkkl 98 
                               +n+ L kk+
  Peinf101Scf00500g03031.1 164 QNNLLAKKV 172
                               *****9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.212161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-33285IPR002100Transcription factor, MADS-box
CDDcd002657.27E-42279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.58688178IPR002487Transcription factor, K-box
PfamPF014862.3E-3090172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGRVQMKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYATD  60
SCMERILERY ERYSYADRQL VPTDHSSPGS LNLEHAKLKA RIEVLQRNQR HYMGEDLDSL  120
SMKELQNLEQ QLDSSLKHIR SRKNQLMHES ISELQKKDKS LQEQNNLLAK KVLIILIARI  180
ESTSHCKTLQ LRVPMKEAYQ STVDNGEVEG ASQQQPANTM PPWMLRHLNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q7e-22174173Myocyte-specific enhancer factor 2B
1tqe_R7e-22174173Myocyte-specific enhancer factor 2B
1tqe_S7e-22174173Myocyte-specific enhancer factor 2B
6byy_A9e-22174173MEF2 CHIMERA
6byy_B9e-22174173MEF2 CHIMERA
6byy_C9e-22174173MEF2 CHIMERA
6byy_D9e-22174173MEF2 CHIMERA
6bz1_A9e-22174173MEF2 CHIMERA
6bz1_B9e-22174173MEF2 CHIMERA
6bz1_C9e-22174173MEF2 CHIMERA
6bz1_D9e-22174173MEF2 CHIMERA
6c9l_A7e-22174173Myocyte-specific enhancer factor 2B
6c9l_B7e-22174173Myocyte-specific enhancer factor 2B
6c9l_C7e-22174173Myocyte-specific enhancer factor 2B
6c9l_D7e-22174173Myocyte-specific enhancer factor 2B
6c9l_E7e-22174173Myocyte-specific enhancer factor 2B
6c9l_F7e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1767820.0AF176782.1 Petunia x hybrida MADS box transcription factor (PFG) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236550.11e-128PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-123AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLQ9SBQ11e-140Q9SBQ1_PETHY; MADS box transcription factor
STRINGXP_009625854.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-94AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]