PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00500g06045.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 310aa MW: 35372 Da PI: 7.9088

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00500g06045.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	141.1	6.4e-44	19	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL kkv ++++ + +i evd++k+ePwdLp ++dkky+tg r+nrat++gyWka Peinf101Scf00500g06045.1 19 LPPGFRFHPTDEELITHYLSKKVVDTNFFA-IAIGEVDLNKIEPWDLP--------------CKDKKYPTGLRTNRATAAGYWKA 88 79***********************877.78**********9..............5799*************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkd+e+++ +++lvg+kktLvfykgrapkgekt+Wv+heyrle Peinf101Scf00500g06045.1 89 TGKDREIFR-GKSLVGMKKTLVFYKGRAPKGEKTNWVIHEYRLE 131 *****.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-52	15	155	IPR003441	NAC domain
PROSITE profile	PS51005	47.702	19	155	IPR003441	NAC domain
Pfam	PF02365	3.6E-24	20	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MENYTGIIYK DDHDQQMELP PGFRFHPTDE ELITHYLSKK VVDTNFFAIA IGEVDLNKIE 60 PWDLPCKDKK YPTGLRTNRA TAAGYWKATG KDREIFRGKS LVGMKKTLVF YKGRAPKGEK 120 TNWVIHEYRL EGRSSLQNLP KTAKNEWVIC RVFQKSYGGK KIHISGLVKL DYDENEMGNS 180 FLPPLTDSSP YTCRIKPTPS QSSHVHCFSN YFTAQKSQEN MTTYFNNSPF PTQSNPMENF 240 PISSLHNTFS CNQTVPVQGI FTNQGSFGMQ DPTILRTILE NYGEIFKKEE VALSQETGLS 300 NDMNTEISSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	8	161	6	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	8	161	6	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	8	161	6	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	8	161	6	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-43	8	161	9	174	NAC domain-containing protein 19
3swm_B	2e-43	8	161	9	174	NAC domain-containing protein 19
3swm_C	2e-43	8	161	9	174	NAC domain-containing protein 19
3swm_D	2e-43	8	161	9	174	NAC domain-containing protein 19
3swp_A	2e-43	8	161	9	174	NAC domain-containing protein 19
3swp_B	2e-43	8	161	9	174	NAC domain-containing protein 19
3swp_C	2e-43	8	161	9	174	NAC domain-containing protein 19
3swp_D	2e-43	8	161	9	174	NAC domain-containing protein 19
4dul_A	2e-43	8	161	6	171	NAC domain-containing protein 19
4dul_B	2e-43	8	161	6	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802067.1	0.0	PREDICTED: NAC domain-containing protein 100 isoform X1
Refseq	XP_009802134.1	0.0	PREDICTED: NAC domain-containing protein 100 isoform X1
Refseq	XP_016439814.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X1
Refseq	XP_016439815.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X1
Swissprot	Q9FLJ2	1e-108	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3XIL9	1e-179	A0A1S3XIL9_TOBAC; NAC domain-containing protein 100-like isoform X1
TrEMBL	A0A1U7YD76	1e-179	A0A1U7YD76_NICSY; NAC domain-containing protein 100 isoform X1
STRING	XP_009802067.1	1e-180	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-110	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]