PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00500g09036.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WRKY

Protein Properties

Length: 563aa MW: 61302.5 Da PI: 7.9613

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00500g09036.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.4	2e-30	208	267	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Peinf101Scf00500g09036.1 208 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHP 267 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.8E-32	193	269	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-27	201	269	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	203	269	IPR003657	WRKY domain
SMART	SM00774	1.4E-36	208	268	IPR003657	WRKY domain
Pfam	PF03106	6.7E-27	209	267	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
GAGMVKRERS PPENSMASSS THKEQDDQLA SAKAEMRDVM EENHRLRTHL DRLMKDYRNL 60 QNQLHDVVQK EQTEISSSTV NTTHHESEEE ADQLVSLSLG RTSSDMKKEE LSKFFSKNKA 120 EEENKGGLTL GLDCKFGKNT TPSESSPINL SPENSLEEAA KEENGDTWPP NKILKTMRNN 180 GENDDVSQQN PTKRARVSVR VRCDAPTMND GCQWRKYGQK IAKGNPCPRA YYRCTVAPSC 240 PVRKQVQRCA EDMSILITTY EGTHNHPLPL AATAMASTTS AAACMLLSGS STSSDHQNPQ 300 LSTTNTATTS ANINGLNFYL SDNSKPKPFY FPNSSISSAP NALPTITLDL TSSSSSTSLS 360 HLNKMSSYNF PPRYNNSSTN LNFSSLESNP LPISWSNGVL NYANQAYNKN QNSGSLNFSS 420 RPSTTQDISL LQSYLQKSII NNPTSTQSSL VQQDTIAAAT KAITSDPNFQ SALAAALTSI 480 MGNPTGNNKS EPFPILSSLP SSSNNPNNCS SSFLNKPTTT NSSSANTRPG NNNLVFFTQP 540 NSSLPFSTST KGKSTSSSEN KFD

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

GAGMVKRERS PPENSMASSS THKEQDDQLA SAKAEMRDVM EENHRLRTHL DRLMKDYRNL  60
QNQLHDVVQK EQTEISSSTV NTTHHESEEE ADQLVSLSLG RTSSDMKKEE LSKFFSKNKA  120
EEENKGGLTL GLDCKFGKNT TPSESSPINL SPENSLEEAA KEENGDTWPP NKILKTMRNN  180
GENDDVSQQN PTKRARVSVR VRCDAPTMND GCQWRKYGQK IAKGNPCPRA YYRCTVAPSC  240
PVRKQVQRCA EDMSILITTY EGTHNHPLPL AATAMASTTS AAACMLLSGS STSSDHQNPQ  300
LSTTNTATTS ANINGLNFYL SDNSKPKPFY FPNSSISSAP NALPTITLDL TSSSSSTSLS  360
HLNKMSSYNF PPRYNNSSTN LNFSSLESNP LPISWSNGVL NYANQAYNKN QNSGSLNFSS  420
RPSTTQDISL LQSYLQKSII NNPTSTQSSL VQQDTIAAAT KAITSDPNFQ SALAAALTSI  480
MGNPTGNNKS EPFPILSSLP SSSNNPNNCS SSFLNKPTTT NSSSANTRPG NNNLVFFTQP  540
NSSLPFSTST KGKSTSSSEN KFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	195	269	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU017422	1e-122	GU017422.1 Solanum lycopersicum WRKY72-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016498008.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	D8VNC6	1e-177	WK72B_SOLLC; WRKY transcription factor 72B
TrEMBL	A0A1S4CA48	0.0	A0A1S4CA48_TOBAC; probable WRKY transcription factor 61
STRING	XP_009601191.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	4e-67	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]