PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00506g14001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NF-YC

Protein Properties

Length: 261aa MW: 28815.7 Da PI: 4.652

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00506g14001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.4	5.5e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + Peinf101Scf00506g14001.1 1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 69 899*************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	2.1E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.2E-18	1	68	IPR009072	Histone-fold
SuperFamily	SSF47113	3.35E-19	1	71	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DRTYDITLRR GAKTVNSLHL KHCVQSYNVF 60 DFLREVVSKV PDYGHSDAAG EMPKRRKVAI EEHHDSEDES KRSRMEMCAS PSGSSGRGRG 120 RGRGRGRGRG SRADRELSRP DMQLDSCTSV QQSGQQNPNP GTQVENNAEL KGSPKQDSSA 180 CERESSATTT LNLNANIDDT VDKSTAPEIA ACNSLSRPAD EKAEEGPQWS LEMERMVIDP 240 AHMSQLNSSL VEEEEDYDEE D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	128	RGRGRGRGRGR
2	120	129	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780056.1	1e-142	PREDICTED: dr1-associated corepressor-like
Refseq	XP_019247410.1	1e-142	PREDICTED: dr1-associated corepressor-like isoform X2
Refseq	XP_019247411.1	1e-142	PREDICTED: dr1-associated corepressor-like isoform X3
TrEMBL	A0A1J6IB46	1e-141	A0A1J6IB46_NICAT; Uncharacterized protein
TrEMBL	A0A1U7WRX6	1e-141	A0A1U7WRX6_NICSY; dr1-associated corepressor-like
STRING	XP_009780056.1	1e-141	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-51	nuclear factor Y, subunit C11