PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00527g08008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

M-type_MADS

Protein Properties

Length: 152aa MW: 17826.2 Da PI: 8.771

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00527g08008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.1	3e-20	3	51	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 i++k r+v+fskR++ ++KKA ELS+L+ a++ v++fs++gk y+y Peinf101Scf00527g08008.1 3 LIKSKETRYVSFSKRKANLFKKADELSTLTRADIGVVLFSPSGKSYTYG 51 69*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.44E-20	1	68	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.2E-16	1	53	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.656	1	54	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-20	4	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-8	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-8	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MKLIKSKETR YVSFSKRKAN LFKKADELST LTRADIGVVL FSPSGKSYTY GSTNIEEIID 60 KFLQWKQDES DDDDDESDYD NVDKLLDVFK EFDDLHYAIV ALNELEKRRT RRYKIIHPSS 120 EIPPDKNRLV RVRSISGKIF TSSEILHFRT RI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016541016.1	3e-41	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A2G2WVH6	1e-41	A0A2G2WVH6_CAPBA; Uncharacterized protein
STRING	XP_009779179.1	2e-39	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	8e-19	AGAMOUS-like 29