PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00536g05009.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

G2-like

Protein Properties

Length: 276aa MW: 31343.4 Da PI: 6.8904

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00536g05009.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.6e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Peinf101Scf00536g05009.1 21 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-32	18	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.455	18	78	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-16	21	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	8.1E-9	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-23	120	166	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MDRMMYNSGY ENGVVMTRDP KPRLRWTADL HDRFVDAVTK LGGPDKATPK SVLRLMGLKG 60 LTLYHLKSHL QKYRLGQQTK KQNAVEQNRD NIGEFCMILN THLKSLPESK RSLYLNREVS 120 ISEALSSQFE VQKRLHEQLE VQQKLQMRIE AQGKYLQAIL DKAQKSLSTD MNSPSAVEAT 180 RTQLTDFNLA LSNLMDCVHG DNQDETVAGR GTQDDTNRHL PSSTYLSEEE QKNNMNIKLE 240 EDSISFDLNS ISSYDFIGMN AAALEAKPLS NGRFEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY303170	1e-108	AY303170.1 Solanum bulbocastanum chromosome 8 clone UW3A14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019237544.1	1e-153	PREDICTED: myb family transcription factor PHL11-like
Swissprot	C0SVS4	5e-76	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A1S3XK76	1e-148	A0A1S3XK76_TOBAC; myb family transcription factor APL-like
STRING	XP_009617645.1	1e-148	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	2e-75	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]