PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00540g02017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 135aa    MW: 15333.5 Da    PI: 8.7271
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00540g02017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.62.1e-191258147
                    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47
                              +CaaCk lrrkC++dC++ pyfp ++p++f +vh+++Ga+nv k+l+
  Peinf101Scf00540g02017.1 12 RCAACKQLRRKCPSDCIFLPYFPPNNPQRFSYVHRIYGANNVGKMLQ 58
                              6********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.50811113IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-181258IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
KKDLQTKMTS TRCAACKQLR RKCPSDCIFL PYFPPNNPQR FSYVHRIYGA NNVGKMLQDP  60
VYGSVGIITV LHQEIDHLQC QLAKVQAQID LLKAQTPVQG ELRQQIDFSA NLLADQNGIY  120
TSSPSSFDPS THWFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-216935113LOB family transfactor Ramosa2.1
5ly0_B2e-216935113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-46HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238658.13e-70PREDICTED: LOB domain-containing protein 24-like
SwissprotP594679e-31LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594688e-31LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A1J6KI986e-69A0A1J6KI98_NICAT; Lob domain-containing protein 24
STRINGXP_009589427.14e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52772039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-33LOB domain-containing protein 24