PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00549g05024.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TALE
Protein Properties Length: 958aa    MW: 107667 Da    PI: 6.4878
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00549g05024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-094134501954
                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  Peinf101Scf00549g05024.1 413 FEHflHPYPKDSEKITLARQTGLTRSQVANWFINARVR 450
                               554459******************************88 PP
2Homeobox27.17.2e-098999361954
                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               Fe   ++yp+ +e+  L++++gL+++qV++WF N R +
  Peinf101Scf00549g05024.1 899 FEHflHPYPNDSEKLMLSSQTGLSKNQVSNWFINARVR 936
                               554459******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.3E-56202348IPR006563POX domain
PfamPF075268.3E-47208346IPR006563POX domain
PROSITE profilePS5007112.406391454IPR001356Homeobox domain
SMARTSM003894.3E-10394458IPR001356Homeobox domain
CDDcd000866.10E-12394455No hitNo description
SuperFamilySSF466897.7E-17395460IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27397460IPR009057Homeodomain-like
PfamPF059203.6E-17411450IPR008422Homeobox KN domain
PfamPF075265.0E-6748825IPR006563POX domain
PROSITE profilePS5007111.629877940IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-26879952IPR009057Homeodomain-like
SMARTSM003894.2E-9880944IPR001356Homeobox domain
CDDcd000863.32E-10880941No hitNo description
SuperFamilySSF466891.37E-16886947IPR009057Homeodomain-like
PfamPF059202.1E-16897936IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MSAYYSNLSN QREVLPMSFL PDQKYASYQS TGLSDSSIHL NQHSASVSYS ELPAHNYGDV  60
QTLRGKDEML FIPPTSESAV NAASNFLENS VMMDPRSFPT KQLLVPNVEQ SLQNQGLSLS  120
LGTQVPPSLH VYSYQDDYTN SSLSSLVGTH VLHSGQGSDN KEPKVAEYLS FDLAGGSRAA  180
NNPESSMSLR EMSSGTRLNV GSGVAAAIYN SKYLKAAQEL LDEVVNVHEA LKQSDRLHNF  240
NLLRQDRSEE ADLKSSCSAT GISGEHNNST RANELSPAER HDLESKMTKL FSMLDEVDRR  300
YKDYYQQMQV MVSSFEMVAG LGAAKPYTSL ALKTISRQFR CLRDAIKKQI QLTRGSLGEQ  360
GDSQGERLYR LRYVDQQLRQ QRSLQQFGMM RQPWRPQRGL PETAVSVLRA WLFEHFLHPY  420
PKDSEKITLA RQTGLTRSQV ANWFINARVR LWKPMIEDMY KDEFGEAEAG SGASPERESK  480
EKSIAENTGE EIHESFTTPA ANCSHLDPSD ESSNFVTNVQ NNTFATKFSF QDGAYEHEKI  540
SPKPVISSTQ ASDGSTIGAV NGYHPSMFSD IMGNQVSLAL RLQNSQIDQQ SIAGRTQLRE  600
HEKTDSNVDI GKGEYYYIDQ QESQHFDMYQ SSVSNTTTYQ PPSVMPSIQS YGERMSRSIE  660
LVHPQYTTDP DVNNNRHLID LLGTSHEANH QAQRLSLSLG SNSLVSSVSN LIHPSYINQG  720
VNRENNEFSF PMNQSFTNVC GTESFVSVIG NSKYLRPAQS LLDELVCVGG KTIDLSNEKF  780
IRQLSRNSKK GSLSLRAMLK AEIPSNELFN ERHELYAKLM KLIALDTIIS QINVIRLQIP  840
RDVPKISSGL SHLSLFEKET LQNRMSLQTL GIIQSNRQAW RPIRGLPETS VAILRSWLFE  900
HFLHPYPNDS EKLMLSSQTG LSKNQVSNWF INARVRLWKP MIEEMYKEEF AESSVDAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16400944563Homeobox protein Meis2
3k2a_B3e-16400944563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341980.10.0PREDICTED: BEL1-like homeodomain protein 3
RefseqXP_015161897.10.0PREDICTED: BEL1-like homeodomain protein 3
SwissprotQ9FWS91e-111BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A3Q7GA600.0A0A3Q7GA60_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000096100.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112582022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.23e-99BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]