PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00557g12021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 223aa    MW: 26679.8 Da    PI: 10.4943
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00557g12021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.41.6e-2534120190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               kfY eYA++ GFsvr+++ ++s+++++i+ ++fvC keg+r++++ +   ++++r etr gCk ++ ++ke++gkw+ ++l   H
  Peinf101Scf00557g12021.1  34 KFYLEYAHRSGFSVRRNQISRSRKDKSIIGQEFVCLKEGFRSKKSLE---SNQQRDETRKGCKVMIYLSKEEEGKWVNARLIPYH 115
                               6******************************************9887...9999******************************* PP

                      FAR1  86 nHela 90 
                               nHela
  Peinf101Scf00557g12021.1 116 NHELA 120
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-2334120IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.794167203IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-7179202IPR007527Zinc finger, SWIM-type
SMARTSM005750.0033180205IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKNRERPILV WNSNHLILHL NFILNMRIXN TAFKFYLEYA HRSGFSVRRN QISRSRKDKS  60
IIGQEFVCLK EGFRSKKSLE SNQQRDETRK GCKVMIYLSK EEEGKWVNAR LIPYHNHELA  120
SPLSQKFLRS KRKKSEAQKS LIDLFDTSGV RSRWDKVHEF QQQKPEYIVR LNLELKNDVC  180
SCHKFEFMGI LCRHVLMVFI KKQIHSLPPC YLLDRWTIFA TKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068484.12e-61protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3Q7ETW62e-57A0A3Q7ETW6_SOLLC; Uncharacterized protein
TrEMBLD5MNY62e-57D5MNY6_SOLLC; Transposon-like element Lyt2-2 DNA
STRINGSolyc01g110070.1.14e-32(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-20FAR1 family protein