PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00569g10009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 407aa    MW: 46077.2 Da    PI: 5.1054
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00569g10009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-35141052102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+ye+++d++ + ++sws++++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F
  Peinf101Scf00569g10009.1  14 FLAKTYEMVDDPSSDAIVSWSSSNKSFIVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKVDPEK---------WEFANEDF 89 
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                                +g+ +l+++i+r+k 
  Peinf101Scf00569g10009.1  90 VRGQPHLMKNIHRRKP 105
                               *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.1E-3911103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDEATCSTSA LPPFLAKTYE MVDDPSSDAI VSWSSSNKSF IVWNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKVDPE KWEFANEDFV RGQPHLMKNI HRRKPVHSHS AQNLHGLSSP  120
LTESERQGYK EDILKLKHEN ESLQLNLQRH KHDRQGLELQ MQVLTERVQH VEHRQKTMLS  180
ALARRLDKPV MDLSRMPQLQ LNDRKRRLPG NSCLYDDTDL EDNRAISSGT LTSENMNPSS  240
HLTINGELLD QLESSLNFWE NVLQDVDQAG IQQNCSLELD ETTSCADSPA ISYTQLNDDL  300
GHKASGIDMN SEPNANTTPE IATPEDKAAV AGTATKVPTG VNDVFWEQFF TENPGSVDAS  360
EVQSERKDID VKKSESIPVD SGKFWWNMKS VNSLAEQLGH LTPAEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25410319129Heat shock factor protein 1
5d5v_B2e-25410319129Heat shock factor protein 1
5d5v_D2e-25410319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0144840.0AB014484.1 Nicotiana tabacum NtHSF2 mRNA for heat shock factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313182.10.0heat stress transcription factor A-4c-like
RefseqXP_009592186.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotO494031e-116HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A1S4DMM30.0A0A1S4DMM3_TOBAC; heat stress transcription factor A-4c-like isoform X1
STRINGXP_009592186.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-119heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]