PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00576g03029.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

GRAS

Protein Properties

Length: 260aa MW: 29291.1 Da PI: 6.168

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00576g03029.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	28.9	1.4e-09	6	41	73	108
GRAS 73 nsseelaalklfsevsPilkfshltaNqaIleaveg 108 n +e+ + + f++++P+l+f+hltaNqaIlea+ + Peinf101Scf00576g03029.1 6 NIVESDFLQMHFNNTFPYLRFAHLTANQAILEAFGK 41 34444444455**********************976 PP
2	GRAS	125.7	5.4e-39	48	184	82	222
GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166 + ++++ P+l f+++taNqaIlea+++++rvH+iDf+ +qG QWpa++ aLa ++g p lR+Tg+g + ++l e+g++La Peinf101Scf00576g03029.1 48 NSWNDTGPYLIFTNITANQAILEAFANSNRVHVIDFSFNQGSQWPAFMLALALSSGGLPALRLTGIGT----DDDALWEIGRKLA 128 458999************************************************************....9******** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222 +fA++++++f+f+ +v+++l+d++ + +++pg + a + h l ++++++e+ Peinf101Scf00576g03029.1 129 EFARKINLEFQFHGVVVNSLADVDASISNIRPGNVEALDVFEPHHVLSAKPGAIEK 184 *********************988888888766666554444555555666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	24.872	1	260	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-7	6	41	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-36	48	184	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MNPQNNIVES DFLQMHFNNT FPYLRFAHLT ANQAILEAFG KRIHNINNSW NDTGPYLIFT 60 NITANQAILE AFANSNRVHV IDFSFNQGSQ WPAFMLALAL SSGGLPALRL TGIGTDDDAL 120 WEIGRKLAEF ARKINLEFQF HGVVVNSLAD VDASISNIRP GNVEALDVFE PHHVLSAKPG 180 AIEKLFDSQD NSKSTQPMVE RGMLNQWRVR INSAGFNQVQ LHAVKQALDI YSVEEHEECL 240 ILSQNSHPFI IFFAWRPGRM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-19	50	159	102	210	Protein SCARECROW
5b3h_A	2e-19	50	159	101	209	Protein SCARECROW
5b3h_D	2e-19	50	159	101	209	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. {ECO:0000269\|PubMed:15734906}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798071.1	7e-54	PREDICTED: DELLA protein GAI-like
Refseq	XP_016438186.1	7e-54	PREDICTED: DELLA protein GAI-like
Refseq	XP_024996742.1	2e-53	DELLA protein GAI-like
Swissprot	Q5BN23	2e-44	RGA1_BRACM; DELLA protein RGA1
Swissprot	Q7Y1B6	2e-44	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A103YGF7	5e-52	A0A103YGF7_CYNCS; Transcriptional factor DELLA, N-terminal
TrEMBL	A0A1S3XDY8	2e-52	A0A1S3XDY8_TOBAC; DELLA protein GAI-like
TrEMBL	A0A1U7Y811	2e-52	A0A1U7Y811_NICSY; DELLA protein GAI-like
TrEMBL	A0A2J6KBS8	4e-52	A0A2J6KBS8_LACSA; Uncharacterized protein
STRING	XP_009798071.1	3e-53	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-38	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]