PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00578g02001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

M-type_MADS

Protein Properties

Length: 196aa MW: 22602.9 Da PI: 7.4499

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00578g02001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.6	1.6e-18	16	65	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 i++k r+v+fskR++ ++KKAe LS L+ ae av++fs++gk y y+s Peinf101Scf00578g02001.1 16 LIKSKEARYVSFSKRKASLFKKAEDLSNLTKAELAVLLFSPSGKTYSYCS 65 69**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.4E-22	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.446	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.02E-22	8	89	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-15	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-18	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-15	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-15	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MERKVSKGRQ KIEMKLIKSK EARYVSFSKR KASLFKKAED LSNLTKAELA VLLFSPSGKT 60 YSYCSTSIEE ITNKFFQWKQ DESNDDESDH NNIDKLLDVY KDLCDEIKII NDQEKSRRWR 120 YKIIHPDSEI PPDKNMLDRL VECKSQLDIL KKMAIHLQEL MPSTSESVPF TSAKPHLSID 180 LNVLPGLDEG ECSGTK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240978.1	3e-54	PREDICTED: agamous-like MADS-box protein AGL29
STRING	PGSC0003DMT400033861	5e-55	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	6e-17	AGAMOUS-like 29