PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00578g03013.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 259aa MW: 29053.7 Da PI: 7.7684

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00578g03013.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.5e-19	115	169	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k Peinf101Scf00578g03013.1 115 RKKLRLTKAQSALLEESFKEHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 169 788899***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.21E-18	102	172	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.653	111	171	IPR001356	Homeobox domain
SMART	SM00389	1.2E-15	113	175	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-16	115	169	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.1E-18	115	169	IPR009057	Homeodomain-like
CDD	cd00086	3.50E-16	115	172	No hit	No description
PROSITE pattern	PS00027	0	146	169	IPR017970	Homeobox, conserved site
Pfam	PF02183	9.2E-11	171	205	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.3E-24	171	214	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGFDDICTTG LVLGLGFSDQ KSTKITQPLS KGLSLGFEPS LTLSLTNDHT QAAAKKVNDH 60 QLSADDLYRQ DSAASSYSNV SVKRERDLGS EETTTEVERV SSRVSDEDDD GSNARKKLRL 120 TKAQSALLEE SFKEHSTLNP KQKQDLAREL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL 180 KKCCETLTEE NRRLHKELQE LKALKIAQPL YMQLPAATLT MCPSCERIGG VGENPSKNPF 240 TITQKPHFYS PFTNPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	171	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU998972	1e-166	EU998972.1 Capsicum annuum homeodomain leucine-zipper 1 (HB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267376.1	1e-152	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-95	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A314KZ31	1e-151	A0A314KZ31_NICAT; Homeobox-leucine zipper protein hat22
STRING	XP_009775231.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	8e-91	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]