PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00588g00019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 180aa    MW: 21417.1 Da    PI: 4.7979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00588g00019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-075287136
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                              rg+WT++Ed +lv +v+++G ++W+  a+  g++++
  Peinf101Scf00588g00019.1 52 RGPWTEQEDFQLVFYVNLFGDRRWDFLAKVSGLKLS 87
                              89*************************999986665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3074780IPR017877Myb-like domain
SuperFamilySSF466893.67E-64981IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-65080IPR009057Homeodomain-like
PfamPF002491.8E-55283IPR001005SANT/Myb domain
CDDcd001670.001215485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTNYPLQALH CNYSHYIYIT RVHDNCININ QSQVRELKTQ KRKMVQEEII RRGPWTEQED  60
FQLVFYVNLF GDRRWDFLAK VSGLKLSPAV DSIPITKQNK RNLETAEEKK IYNHDEAEEN  120
KNNMVYTMDE IWKNVESSEE AETVSKLPVM ASPIWDYCPD SLWMTDFNYF DNQDIPFFTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0130445e-31BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence.
GenBankHG9754455e-31HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755185e-31HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798979.17e-32PREDICTED: transcription factor MYB48-like
TrEMBLA0A1U7YIA72e-30A0A1U7YIA7_NICSY; transcription factor MYB48-like
STRINGXP_009798979.13e-31(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1619035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.14e-16myb domain protein 48