PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00590g15011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SRS

Protein Properties

Length: 293aa MW: 32328.5 Da PI: 7.0769

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00590g15011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	179.6	1.4e-55	87	217	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 g++sC+dCGnqakkdC+h+RCRtCCksrgf+C+thvkstWv+aakrrerqqq+++++ ++ +++++ kr+ Peinf101Scf00590g15011.1 87 GGGISCEDCGNQAKKDCQHMRCRTCCKSRGFQCTTHVKSTWVSAAKRRERQQQHSSSELEE---HRDHNLKRQ------------ 156 5789********************************************99887753332...222222222............ PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + ++++ le+ ++P+++ss+avf+cvr+ss+d++++++aYqtav+igGh+fkGiLy+qG Peinf101Scf00590g15011.1 157 -----KDDPNSGLEVGNFPAKLSSSAVFQCVRMSSIDENDDQVAYQTAVNIGGHIFKGILYNQGHG 217 .....334556788999*********************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.6E-53	89	216	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.4E-26	91	133	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.4E-26	169	215	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MTGFFSLEGR ETRQEQQHQE STNQQIINQD SNWFLYRNND QELPTYKGFE LWQPNPINQL 60 QDLYPTSLDH GLSSRSANFT IIRSSTGGGI SCEDCGNQAK KDCQHMRCRT CCKSRGFQCT 120 THVKSTWVSA AKRRERQQQH SSSELEEHRD HNLKRQKDDP NSGLEVGNFP AKLSSSAVFQ 180 CVRMSSIDEN DDQVAYQTAV NIGGHIFKGI LYNQGHGSQY NITTAGDTSS SGGEPVSHQH 240 NVIGTTTSAA ANVAGSGGAA VVEGSKLVDP SLYPVATRNT FMAGTQFFTP PRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778393.1	1e-128	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_016477618.1	1e-128	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	5e-94	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S4AMG2	1e-126	A0A1S4AMG2_TOBAC; protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A1U7WIB5	1e-126	A0A1U7WIB5_NICSY; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009778393.1	1e-127	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	7e-61	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]