PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00590g26017.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 221aa MW: 25932.3 Da PI: 5.4712

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00590g26017.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.6e-19	58	111	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F ++++ +e++ +LA++lgL+ qV vWFqNrRa++k+ Peinf101Scf00590g26017.1 58 KRKLSEEQVNLLEQSFVDEHKLETERKDKLASELGLDPHQVAVWFQNRRARWKN 111 45899***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.455	52	112	IPR001356	Homeobox domain
SMART	SM00389	1.2E-17	55	116	IPR001356	Homeobox domain
CDD	cd00086	9.49E-16	57	113	No hit	No description
SuperFamily	SSF46689	8.13E-18	58	120	IPR009057	Homeodomain-like
Pfam	PF00046	3.4E-16	58	111	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.4E-20	59	119	IPR009057	Homeodomain-like
PRINTS	PR00031	1.7E-5	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.7E-5	92	108	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MTSSMTHHEV DDPMMLISQY YPDIYNQLVP EQGELKPRRR RKKNKGESSS SGVAFMRKRK 60 LSEEQVNLLE QSFVDEHKLE TERKDKLASE LGLDPHQVAV WFQNRRARWK NKKLEEEYSK 120 LKTEHETNIV EKCRLETEVL KLKEQLSEAE NEKQRLLLER CDGVSSINSP TTSSFSMEAN 180 CMEPPFYGEF GMDGTLLDNN VFFVAQRTYS QELLEWANLY I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	59	RKKNKGESSSSGVAFMRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605338.1	1e-102	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	9e-71	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A1S4DI66	1e-100	A0A1S4DI66_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRING	XP_009605338.1	1e-101	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	5e-72	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]