PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00622g07006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 214aa    MW: 24376.5 Da    PI: 8.3231
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00622g07006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-151579146
                              TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqk 46
                              +g+WT+eEd ll ++++++G g                     W++Ia +++ gRt++++k++w++
  Peinf101Scf00622g07006.1 15 KGSWTEEEDFLLRKCIEKYGEGkwhlvpniyielvssyhmhsMWSLIAGRLP-GRTANDVKNYWNT 79
                              799*************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4021085IPR017930Myb domain
SuperFamilySSF466899.38E-141277IPR009057Homeodomain-like
SMARTSM007171.3E-131483IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-181482IPR009057Homeodomain-like
PfamPF002495.3E-71543IPR001005SANT/Myb domain
CDDcd001675.83E-111781No hitNo description
PfamPF002493.3E-65579IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MNTIVICTPT LGVRKGSWTE EEDFLLRKCI EKYGEGKWHL VPNIYIELVS SYHMHSMWSL  60
IAGRLPGRTA NDVKNYWNTN FRRKLSPQRQ GKRCRSAIKI TENTIIRPQP RIFSSAKNVS  120
LGSNKSITNS TIHKDESSKN IIRTNEKQMT EASTENGVQW WASLLDDPNE FDKEAATGSI  180
PSNSCNINSK EELPTFLQEG ETGWGDIDLW SLLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4334177e-34EF433417.1 Solanum chilense anthocyanin 1 (ANT1) mRNA, complete cds.
GenBankFJ2351217e-34FJ235121.1 Solanum habrochaites anthocyanin 1 (ANT1) mRNA, complete cds.
GenBankHG9754497e-34HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256541.15e-66PREDICTED: transcription factor MYB113-like
TrEMBLA0A3S6QBA51e-137A0A3S6QBA5_PETHY; Anthocyanin synthesis regulator 1
STRINGXP_009626596.17e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-27myb domain protein 113