PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00635g07018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 849aa    MW: 93905.9 Da    PI: 8.8793
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00635g07018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.11.3e-14762817156
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwen 56 
                               rW+ +ev++Li++r e+++r++  + + +lWee+s+++ ++g+ r+p qCk+ w +
  Peinf101Scf00635g07018.1 762 RWKPEEVKKLIKIRGELHRRFQVLRGRTALWEEISSRLLSGGIDRTPSQCKSQWAS 817
                               8*****************************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.0E-6648298IPR001279Metallo-beta-lactamase
SuperFamilySSF562815.42E-7049463IPR001279Metallo-beta-lactamase
SMARTSM008497.6E-2561258IPR001279Metallo-beta-lactamase
PfamPF127066.0E-1073208IPR001279Metallo-beta-lactamase
PfamPF075214.7E-7406435IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.269755819IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.2E-6757818IPR009057Homeodomain-like
PfamPF138376.8E-10760818No hitNo description
CDDcd122038.68E-18761817No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
LSSSVLLGIR GTKGPHKRPA KTEGAGRSID DSVQRRMEQF YEGSDGPPLR VLPIGGLGEI  60
GMNCMLVGNY DRYILIDAGV MFPGYDELGV QKIIPDTTFI KKWSHKIEAV VITHGHEDHI  120
GALPWVIPAL DSHTPIFASS FTMKLIKKRL KEFGIFVPSR LKEFKIRRKF SAGPFEVESI  180
RVTHSIPDCS GLVLRCANGT ILHTGDWKID ESPLDGKVFD REALEELSKE GVTLMMSDST  240
NVISPGRTLS ETVVADSLLR HISAAKGRVI TTQFASNIHR LGSVKAAADL TGRKLVFVGM  300
SLRTYLEAAW KDGNAPIDPS TLVKVEDIDA YAPKDLLIVT TGSQAETRAA LNLASYGSSH  360
LLKLNKEDII LYSAKVIPGN DSRVMKMLNR ISDIGSTIVM GKNELLHTSG HAHREELEEV  420
LRIVKPQHFL PIHGELLFLK EHELLGRSTG IHHTAVIKNG EMLGISHLRN RKVLSNGFIS  480
LGKENFQLMY SDGDKAFGTS AELCVDERLR IASDGLIVVS MEILRPQFAE GIAEKTLKGK  540
IRITTRCLWL DKGKLLDALH KAAHAALSSC PVNCPLSHME RTVSDVLRKM VMKYSSKKPE  600
VIAVALENPP GVLADEIKGK LSRKSDVGFG ISALRKVLDV DQRKRQPSAT HAEECHAHAN  660
PINDAEQQIK GDDRIDVERF MHKEAITSSS SSQDKFSSSE GLSDNFCKSD ITSIPVDQLS  720
EGSFDNLSQA GSEEMFRKVS VGLDSNLLES KLKSSNPLKR NRWKPEEVKK LIKIRGELHR  780
RFQVLRGRTA LWEEISSRLL SGGIDRTPSQ CKSQWASQES KNDMRSQEKG PYFADMSNIL  840
SDLEATALK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3bk1_A4e-824960817562Metal dependent hydrolase
3bk2_A4e-824960817562Metal dependent hydrolase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754423e-82HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227038.10.0PREDICTED: uncharacterized protein LOC109208380
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A314KRF70.0A0A314KRF7_NICAT; Uncharacterized protein (Fragment)
STRINGXP_009774848.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58742331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]