PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00645g01012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 257aa    MW: 29049.6 Da    PI: 6.6532
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00645g01012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18172206135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Peinf101Scf00645g01012.1 172 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 206
                               *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-832254IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.102.8E-14166203IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.503166202IPR000679Zinc finger, GATA-type
SMARTSM004018.2E-16166216IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-15167230No hitNo description
CDDcd002025.90E-14171218No hitNo description
PROSITE patternPS003440172197IPR000679Zinc finger, GATA-type
PfamPF003206.8E-16172206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDVYGVSAPD LFRIDDLLDF SNDEIFSNNS NSSTTHDSHH HHHHQPHSDN SSSSAATNYY  60
YDGLPNSSDH FTDNLGVPSE DVAELEWLSN FVEDSFSNFP TNSVTGTMNL SSNTTSFHGR  120
SRSKRSRSTS NWTTSSLQNP NATNNITTMK IKHESSAMNT GEIMDEDVPR RCTHCASEKT  180
PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL TQHSNSHRKV MELRRQKEMY  240
HQTPSHTEEE MYGHRYC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347916.11e-122PREDICTED: GATA transcription factor 4
SwissprotO497411e-73GATA2_ARATH; GATA transcription factor 2
TrEMBLM1CGF51e-121M1CGF5_SOLTU; GATA transcription factor
STRINGPGSC0003DMT4000669531e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.14e-67GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]