PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00652g08018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 488aa    MW: 54184.1 Da    PI: 4.4013
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00652g08018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.21.7e-4941311128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lppGfrFhPtd elv++yLk+k+ gkkl++ ++i+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g r nrat++gyW
  Peinf101Scf00652g08018.1   4 LPPGFRFHPTDVELVMYYLKRKIMGKKLHF-DAITELNIYKFSPWDLPeKcCYKSKDLEWYFFCPRERKYASGARMNRATETGYW 87 
                               79**************************99.99**************95445666777*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k+tgkd++v+  ++++vg  ktL+f++g+ pkg++tdWv+heyr+
  Peinf101Scf00652g08018.1  88 KTTGKDRSVIY-DEKVVGSVKTLIFHRGHPPKGQRTDWVIHEYRF 131
                               ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-592154IPR003441NAC domain
PROSITE profilePS5100555.0484154IPR003441NAC domain
PfamPF023651.9E-245130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MARLPPGFRF HPTDVELVMY YLKRKIMGKK LHFDAITELN IYKFSPWDLP EKCCYKSKDL  60
EWYFFCPRER KYASGARMNR ATETGYWKTT GKDRSVIYDE KVVGSVKTLI FHRGHPPKGQ  120
RTDWVIHEYR FEDKGLADAG FVQDAYVLCR VFQKNGLGPQ NGAQYGAPFK EDDWEDDEVP  180
AAEPFTADVF SAPPGLPENQ SYSIVSSLVD PGSTSGWPSG EPSQPSIQRI PSDERDPGEL  240
PAEPNPSNVS SMNWMPSDKL DDEEVPGESN PSNILSALHV LADKQSYSIG SSMINPGPGP  300
SNALLCTNEM HLDEQDDEII GLLAHFTDDP SLLSAGNENN QNMENFNQDL NAPTPFTGGN  360
DIFDGLGDID NWAGLGQSRS NISASWGANY SLNHMIVPDD VAFMELNDLE TPLYHSAETI  420
ETGQFGLGNF YAPYNSNVDM QQLSFASNHV LENQLPMLPV SYTQQVNHSG MVRPCSSLQV  480
RGGSSLGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-43415515169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5098650.0AF509865.1 Petunia x hybrida nam-like protein 2 (NH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019259092.10.0PREDICTED: uncharacterized protein LOC109237264 isoform X1
RefseqXP_019259093.10.0PREDICTED: uncharacterized protein LOC109237264 isoform X1
RefseqXP_019259094.10.0PREDICTED: NAC domain-containing protein 78-like isoform X2
TrEMBLQ8LRM30.0Q8LRM3_PETHY; Nam-like protein 2
STRINGXP_009604550.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.13e-86NAC domain containing protein 103