PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00661g00004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 87aa    MW: 9729.81 Da    PI: 8.92
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00661g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.8e-091055244
                              SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              g WT e  + + +a + + ++   +W+ +ar +g ++t++++k ++
  Peinf101Scf00661g00004.1 10 GYWTVEQNKAFERALAIYDKDtpdRWSNVARAVGGNKTAEEVKRHY 55
                              67*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.69459IPR017877Myb-like domain
SMARTSM007171.6E-8861IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-4956IPR009057Homeodomain-like
SuperFamilySSF466896.94E-131067IPR009057Homeodomain-like
PfamPF002496.8E-71055IPR001005SANT/Myb domain
CDDcd001675.58E-71255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MASSSMSSQG YWTVEQNKAF ERALAIYDKD TPDRWSNVAR AVGGNKTAEE VKRHYEILVQ  60
DVMSIENGRV PFPKYKTTGG RTATADN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-34184182RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594360.19e-49PREDICTED: protein RADIALIS-like 1
RefseqXP_016513075.19e-49PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1731e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4DI482e-47A0A1S4DI48_TOBAC; protein RADIALIS-like 1
STRINGXP_009594360.13e-48(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-38RAD-like 6