PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00669g02001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 155aa    MW: 17845.7 Da    PI: 7.8601
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00669g02001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601071.5e-33111111101
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               aC++Ck++r++C ++C lapyfp +++++f+nv +lFG++n +k+l+++p++++ ++++sl+ eA++r ++Pv+G++++ +kl+ 
  Peinf101Scf00669g02001.1  11 ACSVCKHQRKRCDENCQLAPYFPTSRAEDFQNVYRLFGVNNTIKVLRSVPDDQKGITVESLILEARIRKENPVHGCLAIERKLRA 95 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkeel 101
                               ++e +++el+ +++++
  Peinf101Scf00669g02001.1  96 EIEAHEKELEIIRKQI 111
                               **********999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.33910111IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3111108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MNTDVLMFVG ACSVCKHQRK RCDENCQLAP YFPTSRAEDF QNVYRLFGVN NTIKVLRSVP  60
DDQKGITVES LILEARIRKE NPVHGCLAIE RKLRAEIEAH EKELEIIRKQ IASCKKMTML  120
QMERQQLEEQ LNRSSLALVS PTDAHHHDMV HPPPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-181211112111LOB family transfactor Ramosa2.1
5ly0_B1e-181211112111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801618.11e-83PREDICTED: LOB domain-containing protein 22-like
RefseqXP_016471190.11e-83PREDICTED: LOB domain-containing protein 22-like
TrEMBLA0A1S4A3K43e-82A0A1S4A3K4_TOBAC; LOB domain-containing protein 22-like
TrEMBLA0A1U7YEQ33e-82A0A1U7YEQ3_NICSY; LOB domain-containing protein 22-like
STRINGXP_009801618.16e-83(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-28LOB domain-containing protein 27