PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00672g11003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 228aa    MW: 26118.8 Da    PI: 4.4186
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00672g11003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151463148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                              +g+WT+eEd++lv ++++ G g+W++ ++      gRt++++k+ w+++l
  Peinf101Scf00672g11003.1 14 KGPWTPEEDQILVSYIEKNGHGNWRALPKLAArlPGRTDNEIKNVWHTHL 63
                              79***********************9988888888************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-23569IPR009057Homeodomain-like
SuperFamilySSF466891.38E-16869IPR009057Homeodomain-like
PROSITE profilePS5129422.008967IPR017930Myb domain
SMARTSM007176.5E-121365IPR001005SANT/Myb domain
PfamPF002491.1E-131463IPR001005SANT/Myb domain
CDDcd001671.06E-121663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDQILVSYIE KNGHGNWRAL PKLAARLPGR TDNEIKNVWH  60
THLKKRLKNY QPPQNSKRHN HDSKAPSTSK MLDNSENFST IQEDINEPMN GPNSPQRSSS  120
ETSTVTADSL TGTDVTNDDQ TFIKHEEMDS YENFPEIDES FWTEDLSMGD NLDLDMEVAG  180
EKSQVQFPYS HDMKEQSVDM VGAKLEDDMD FWYNVFIKAE DLLDLPEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ139970.0Z13997.1 P.Hybrida myb.Ph2 gene encoding protein 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261805.11e-116PREDICTED: myb-related protein Myb4-like
TrEMBLQ029931e-150Q02993_PETHY; Protein 2
STRINGXP_009762172.11e-115(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-45myb domain protein 15