PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00679g10005.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 142aa MW: 17005.4 Da PI: 6.7989

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00679g10005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.2	1.7e-32	8	123	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGf+F+Ptdeelv++yLk kv++ ++ ++i+++d +++Pw+L++++ ++++wyfFs+ ++ +rat++gyWk+ Peinf101Scf00679g10005.1 8 LPPGFQFDPTDEELVMYYLKSKVANLPFYP-NIIPDLDFSSSDPWELKERALLSKNQWYFFSQVKE--------TRATERGYWKE 83 79***********************888.89**********977777899*99754........699**** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++++ ++++ g+kk +v+y + ++t+W+m+e++l Peinf101Scf00679g10005.1 84 LHTNESIFKNcGEKVAGIKKYFVYY----IHEVQTNWIMEEFHL 123 *****9777889*****....44578******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-38	5	129	IPR003441	NAC domain
PROSITE profile	PS51005	36.359	8	142	IPR003441	NAC domain
Pfam	PF02365	7.6E-24	9	123	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MDDQMIVLPP GFQFDPTDEE LVMYYLKSKV ANLPFYPNII PDLDFSSSDP WELKERALLS 60 KNQWYFFSQV KETRATERGY WKELHTNESI FKNCGEKVAG IKKYFVYYIH EVQTNWIMEE 120 FHLSSRNSFK KPSKKRESEK VL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-24	6	141	15	154	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-24	6	141	15	154	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-24	6	141	15	154	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-24	6	141	15	154	NO APICAL MERISTEM PROTEIN
3swm_A	2e-24	6	131	18	156	NAC domain-containing protein 19
3swm_B	2e-24	6	131	18	156	NAC domain-containing protein 19
3swm_C	2e-24	6	131	18	156	NAC domain-containing protein 19
3swm_D	2e-24	6	131	18	156	NAC domain-containing protein 19
3swp_A	2e-24	6	131	18	156	NAC domain-containing protein 19
3swp_B	2e-24	6	131	18	156	NAC domain-containing protein 19
3swp_C	2e-24	6	131	18	156	NAC domain-containing protein 19
3swp_D	2e-24	6	131	18	156	NAC domain-containing protein 19
4dul_A	2e-24	6	141	15	154	NAC domain-containing protein 19
4dul_B	2e-24	6	141	15	154	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246639.1	5e-69	PREDICTED: NAC domain-containing protein 104-like
TrEMBL	A0A1S4BYV5	3e-64	A0A1S4BYV5_TOBAC; NAC domain-containing protein 104-like
TrEMBL	A0A1U7XJZ3	3e-64	A0A1U7XJZ3_NICSY; NAC transcription factor NAM-B2-like
STRING	XP_009792377.1	4e-65	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13785	12	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-39	xylem NAC domain 1