PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00692g18018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 177aa    MW: 20319.5 Da    PI: 6.0244
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00692g18018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.21.9e-1582173284374
                      GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpL 367
                                +E +++++ i+n+++  g+er+ rh +le Wr+ ++++G++++++s++a + a+ll+++ + +g  + + +++sl+  Wk+ p+
  Peinf101Scf00692g18018.1  82 QLEGVYVRKIIRNIITYHGEERVPRHVKLEVWRDLFKRFGLEEAEMSHSALCIASLLVERSEHHGlLTFDMDRKSLITSWKGTPM 166
                               5789999*******************************************************88869999*************** PP

                      GRAS 368 vsvSaWr 374
                                s+ aW+
  Peinf101Scf00692g18018.1 167 ASLLAWT 173
                               ******5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.5E-1382173IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSASASGSPV QRIVLLFADA LQQKIDKEIG NMSLNEDEDM EVFTKEIKEF NMNLEPVICA  60
TRPVACMDKF DTYKGKQLSI PQLEGVYVRK IIRNIITYHG EERVPRHVKL EVWRDLFKRF  120
GLEEAEMSHS ALCIASLLVE RSEHHGLLTF DMDRKSLITS WKGTPMASLL AWTFQQD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160788.15e-33PREDICTED: scarecrow-like protein 28
TrEMBLA0A0V0HH626e-32A0A0V0HH62_SOLCH; Putative ovule protein
TrEMBLM0ZMM43e-31M0ZMM4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000039544e-32(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2535822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.13e-07RGA-like protein 3