PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00702g04002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ERF

Protein Properties

Length: 227aa MW: 25817 Da PI: 7.9416

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00702g04002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	67.1	3.3e-21	116	167	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+++AeIrdp+ +g r++lg+f+ta eAaka+++a+ k++g Peinf101Scf00702g04002.1 116 SHYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTFDTAIEAAKAYDRAAFKMRG 167 79******.******96554..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.9E-15	116	167	IPR001471	AP2/ERF domain
CDD	cd00018	2.40E-32	116	175	No hit	No description
SuperFamily	SSF54171	2.09E-23	116	177	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.9E-33	117	176	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.933	117	175	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-38	117	181	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.6E-14	118	129	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.6E-14	157	177	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MDCLDEYFAL EKIRNHLLTD FLSFGASVSS SSSESTNSTH NQTNFVNLES ESSISSSDCF 60 QYESKPETFI DLTSPKSSNN WKPSLKIDVN KFEWIDFSNS TEKNPIIRVE KTEEKSHYRG 120 VRQRPWGKYA AEIRDPKRRG SRVWLGTFDT AIEAAKAYDR AAFKMRGSKA ILNFPLEVGK 180 NMVVSSSAVD CGVKRPREAE EEKVVKKAER CKEELSWPLS PLSLIQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-31	117	178	2	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00549	DAP	Transfer from AT5G47230	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609421.1	2e-92	PREDICTED: ethylene-responsive transcription factor 5-like
Swissprot	O80341	4e-43	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A1S4AWP9	1e-90	A0A1S4AWP9_TOBAC; ethylene-responsive transcription factor 5-like
STRING	XP_009609421.1	9e-92	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA963	23	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	1e-44	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]