PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00713g00005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 208aa    MW: 23203.6 Da    PI: 8.4833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00713g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08126166954
                               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  Peinf101Scf00713g00005.1 126 ARHRRERISERIRVLQRLVPGG-----TKMDTASMLDEAVHYVKFL 166
                               699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.396117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14118177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-14121178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-14123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-6127166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-6139171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDLQDIAQSL ELGFSNSSNI EMIPLQPSVH NSYLMTSPPS NFSFMGNPIE EVPNVTHLSS  60
IDDIIASAHN NGNGYSCLQN RNSMEAMREM IFRMAMMQPV HIDPESVKPP KRKNVKISKD  120
PQSVAARHRR ERISERIRVL QRLVPGGTKM DTASMLDEAV HYVKFLKKQL QSLEQAAVDN  180
RPMVAGFSTI LSPGPMNYNS SSSAQMLS
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799029.11e-118PREDICTED: transcription factor HEC1-like
SwissprotQ9SND49e-48HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A1U7YIF21e-117A0A1U7YIF2_NICSY; transcription factor HEC1-like
STRINGXP_009799029.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.15e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]