PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00713g11009.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 145aa MW: 16078.5 Da PI: 8.7188

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00713g11009.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.9	8.5e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq+ Peinf101Scf00713g11009.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQH 91 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 +l+q++ +l +k+e Peinf101Scf00713g11009.1 92 KLKQVQDDLLNAKKE 106 ******9988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.681	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.6E-44	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNAAQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISLLQ HKLKQVQDDL LNAKKELATY VGPSAMLPIL 120 QPSGNLMGVY QHIKRHGKGD KDDVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-50	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-50	3	110	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792980.1	1e-84	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_016501970.1	1e-84	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_019264646.1	1e-84	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_019264647.1	1e-84	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	8e-74	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1S4CLH7	3e-83	A0A1S4CLH7_TOBAC; LOB domain-containing protein 36-like
TrEMBL	A0A1U7Y2I1	3e-83	A0A1U7Y2I1_NICSY; LOB domain-containing protein 36-like
TrEMBL	A0A314L3T6	3e-83	A0A314L3T6_NICAT; Lob domain-containing protein 36
STRING	XP_009792980.1	6e-84	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-76	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]