PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00714g06016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LSD
Protein Properties Length: 136aa    MW: 14202.7 Da    PI: 8.0712
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00714g06016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.65e-142852125
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                              C+gCr+lL YP GA+sV+Ca+C++V
  Peinf101Scf00714g06016.1 28 CSGCRNLLLYPVGATSVCCAICNAV 52
                              ************************9 PP
2zf-LSD146.94.3e-156791125
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                              CggC+tlL+Y rGA+sV+C++C+tV
  Peinf101Scf00714g06016.1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                              ************************9 PP
3zf-LSD1421.5e-13105129125
                   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                               Cg+Cr lL+Y +GA+sV+Ca+C++V
  Peinf101Scf00714g06016.1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                               ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.102.1E-420126No hitNo description
TIGRFAMsTIGR010533.6E-132555IPR005735Zinc finger, LSD1-type
PfamPF069435.7E-112852IPR005735Zinc finger, LSD1-type
SuperFamilySSF486952.37E-528126IPR011031Multihaem cytochrome
TIGRFAMsTIGR010537.8E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.6E-12102132IPR005735Zinc finger, LSD1-type
PfamPF069439.2E-13105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MPVPLAPYPT PPTTFSPPAN GTQSQLVCSG CRNLLLYPVG ATSVCCAICN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT AVGLKS
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0107873e-47AP010787.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0012J05, complete sequence.
GenBankHG9754473e-47HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755203e-47HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593714.16e-86protein LOL1
RefseqXP_021593716.16e-86protein LOL1
RefseqXP_021593717.16e-86protein LOL1
RefseqXP_021593718.16e-86protein LOL1
SwissprotQ0J7V97e-75LSD1_ORYSJ; Protein LSD1
SwissprotQ93ZB13e-75LOL1_ARATH; Protein LOL1
TrEMBLA0A2C9UHS81e-84A0A2C9UHS8_MANES; Uncharacterized protein
TrEMBLA0A2G5CPJ22e-84A0A2G5CPJ2_AQUCA; Uncharacterized protein
STRINGcassava4.1_018557m2e-85(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.19e-76lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]