PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00716g06007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 404aa MW: 41848.1 Da PI: 6.4522

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00716g06007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.4e-12	210	255	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Peinf101Scf00716g06007.1 210 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 255 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-17	203	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.45E-13	203	259	No hit	No description
PROSITE profile	PS50888	17.39	205	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	207	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-9	210	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	211	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MQAMNTFQQQ SQMSLQDLHD SEETSGQQMG HPAHFDPTSS HDDFLQQILS SVPSSSPWPD 60 ISGEGQHNSH HPYNFDDQST LLASKLRQHQ ITGGGAAAAA AKALMLHQQL LHGGGMPPLG 120 LGNGGDQNDD VANPGNDISA LYNGFAGSLG QTSNQSQHFH PGGGTMQAQS FGAPPSSTMN 180 QTPAASGGSA GGQPKQQKVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK 240 ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA GVAPLVADRS SEGGGGGDRV QGNGAPRGTN 300 GTTSSANNDS SMTMTEHQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI STATCHSRNP 360 MTTTNNPLLG GGPATNGGGE TGGPSSPSLS ASTVQSATMG NGGA

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MQAMNTFQQQ SQMSLQDLHD SEETSGQQMG HPAHFDPTSS HDDFLQQILS SVPSSSPWPD  60
ISGEGQHNSH HPYNFDDQST LLASKLRQHQ ITGGGAAAAA AKALMLHQQL LHGGGMPPLG  120
LGNGGDQNDD VANPGNDISA LYNGFAGSLG QTSNQSQHFH PGGGTMQAQS FGAPPSSTMN  180
QTPAASGGSA GGQPKQQKVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK  240
ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA GVAPLVADRS SEGGGGGDRV QGNGAPRGTN  300
GTTSSANNDS SMTMTEHQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI STATCHSRNP  360
MTTTNNPLLG GGPATNGGGE TGGPSSPSLS ASTVQSATMG NGGA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	219	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251756.1	0.0	transcription factor bHLH66 isoform X1
Swissprot	Q9ZUG9	2e-93	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A3Q7J4B1	0.0	A0A3Q7J4B1_SOLLC; Uncharacterized protein
STRING	Solyc12g010170.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-64	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]