PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00736g13003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TALE
Protein Properties Length: 342aa    MW: 38846.4 Da    PI: 6.8008
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00736g13003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox192.4e-062793033155
                               HHHHHHCTS-HHHHHHHHHHHHHHH CS
                  Homeobox  31 eeLAkklgLterqVkvWFqNrRake 55 
                                 LA+++gL+++q+ +WF N+R ++
  Peinf101Scf00736g13003.1 279 VALAESTGLDQKQINNWFINQRKRH 303
                               5799******************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-1593137IPR005540KNOX1
PfamPF037902.2E-2095136IPR005540KNOX1
SMARTSM012561.5E-26144195IPR005541KNOX2
PfamPF037911.3E-23148193IPR005541KNOX2
PfamPF037896.6E-10238259IPR005539ELK domain
PROSITE profilePS5121311.243238258IPR005539ELK domain
SMARTSM011881.0E-6238259IPR005539ELK domain
SMARTSM003899.8E-4260310IPR001356Homeobox domain
SuperFamilySSF466891.11E-9261318IPR009057Homeodomain-like
CDDcd000865.33E-7277307No hitNo description
PROSITE profilePS500719.588277306IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-13278309IPR009057Homeodomain-like
PfamPF059209.9E-9278302IPR008422Homeobox KN domain
PROSITE patternPS000270281304IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MENYNQLGEN SAQRGNFFYG GNSVLAPPNS SIYDDQSQVV AHPIVKTEGG SSSNTSHHHH  60
TFQYPSIIRS GHHHQQTVHN HHHESENSSG EVVGLKAKIL AHPQCSSLLD AYMDCQKVGA  120
PPEVMARLST LRQEFEMRQR ASLTGKDVAK DPELDQFMEA YYDMLVKYRE ELTRPLQEAM  180
DFMRTIETQL NMLGNGPVRV FNSEDNKCEG VGSSEEDQDN SGGETELPEI DPRAEDRELK  240
NHLLKKYSGY LSSLKQELSK KKKKGKLPKD ARQKLLKKVA LAESTGLDQK QINNWFINQR  300
KRHWKPSEDM QFMVMDGLHN HPQNAALYIE GHYMGEGPFR LG
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4095440.0GQ409544.1 Petunia x hybrida KNOTTED1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311871.10.0homeotic protein knotted-1-like
RefseqXP_009598343.10.0PREDICTED: homeotic protein knotted-1
SwissprotQ413301e-175KN1_SOLLC; Homeotic protein knotted-1
TrEMBLE2CZB70.0E2CZB7_PETHY; KNOTTED1-like protein
STRINGXP_009598343.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-109KNOTTED-like from Arabidopsis thaliana