PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00753g18019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 475aa    MW: 54054.4 Da    PI: 8.4179
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00753g18019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.39.8e-14531013686
                  trihelix  36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                               +km+e g++rspk+C+ek+en+ k++k++k+g+++r+  + +++++f+qle
  Peinf101Scf00753g18019.1  53 RKMSELGYNRSPKKCREKFENIYKYHKRTKDGRSGRQ--TGKHYRFFEQLE 101
                               589*******************************984..5557******97 PP
2trihelix94.79e-30330415186
                  trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                               rW+k ev aLi +r++++ ++++ g++k+plWe++s +m++ g+ r++k+Ckekwen+nk+y+++ke++k+r +e+s+tcpyf+ 
  Peinf101Scf00753g18019.1 330 RWPKAEVEALIGIRTNLDLQYNDnGSSKGPLWEDISGAMKKLGYDRNAKRCKEKWENINKYYRRVKESQKRR-PEDSKTCPYFHI 413
                               8*********************7589********************************************97.9**********8 PP

                  trihelix  85 le 86 
                               l+
  Peinf101Scf00753g18019.1 414 LD 415
                               87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.0E-953101No hitNo description
PROSITE profilePS500906.748323388IPR017877Myb-like domain
CDDcd122034.53E-22329395No hitNo description
PfamPF138372.2E-22329417No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MLEASAGGGG GAAVTQVVEL KNDGSDGGGS GGDKNSSGNR WPHEETLALL NIRKMSELGY  60
NRSPKKCREK FENIYKYHKR TKDGRSGRQT GKHYRFFEQL ELLDNQSSLL PSNHTMSMPV  120
PMPMPMTMIK AATSGCQDFR MDPCRNLQGF NPEFMSTSTS TTSSSGKESD GRVLKKRKLA  180
GYFERLVKEV LDKQADLHNK FLEAIEKYEK DRMAREEAWK MQEMARIKKE QETLANERAI  240
AAAKDAAVMA FLQKISEQSA QIQLPLDLSQ VSHERHTEER ESESVKPGGS QENVLHQDND  300
KQQENMLDKN IDKQENDSAG ENSFNTSSSR WPKAEVEALI GIRTNLDLQY NDNGSSKGPL  360
WEDISGAMKK LGYDRNAKRC KEKWENINKY YRRVKESQKR RPEDSKTCPY FHILDSIYQN  420
KSKKQMLISD NPGSNVKAGE LLMQIINQQQ QQENQQQQQQ SETGDIYRQS VEQSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016551172.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A2G2VFX70.0A0A2G2VFX7_CAPBA; Trihelix transcription factor GTL1
STRINGPGSC0003DMT4000101120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-61Trihelix family protein