PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00756g00011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family S1Fa-like
Protein Properties Length: 118aa    MW: 13487.1 Da    PI: 9.8142
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00756g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA122.51.5e-383797464
                      S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqG 64
                              + ve+kG+nPGlivllv+ggl+l fl+gny+lyvyaqk+lPP+kkkPvskkk+kre+lkqG
  Peinf101Scf00756g00011.1 37 KDVEVKGFNPGLIVLLVIGGLVLAFLIGNYVLYVYAQKTLPPKKKKPVSKKKMKRERLKQG 97
                              679*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.0E-353997IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MNQAPKLEVE EDLIKINNFI DVKLAKRECQ LEKNMAKDVE VKGFNPGLIV LLVIGGLVLA  60
FLIGNYVLYV YAQKTLPPKK KKPVSKKKMK RERLKQGEYH IKDTCDADAF EKQIVVDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547221e-64AC254722.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-53k5 map 10, complete sequence.
GenBankHG9755221e-64HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627553.19e-22PREDICTED: DNA-binding protein S1FA-like
RefseqXP_009781429.19e-22PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016432997.19e-22PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016471310.19e-22PREDICTED: DNA-binding protein S1FA-like
TrEMBLA0A1S3WZD42e-20A0A1S3WZD4_TOBAC; DNA-binding protein S1FA-like
TrEMBLA0A1S4A3X32e-20A0A1S4A3X3_TOBAC; DNA-binding protein S1FA-like
TrEMBLA0A1U7X3I12e-20A0A1U7X3I1_NICSY; DNA-binding protein S1FA-like
STRINGLus100150732e-21(Linum usitatissimum)
STRINGLus100231772e-21(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249