PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00791g00024.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 253aa    MW: 26629.5 Da    PI: 4.9667
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00791g00024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.93.3e-14117152134
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++Cg ++  Tp++R gp g+++LCnaCGl ++kkg
  Peinf101Scf00791g00024.1 117 CRHCGISSksTPQMRCGPAGPRSLCNACGLVWAKKG 152
                               *****99999************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.1E-4742IPR010399Tify domain
PROSITE profilePS5132011.592742IPR010399Tify domain
PfamPF062006.4E-81741IPR010399Tify domain
SMARTSM004013.8E-6111165IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-10111159No hitNo description
CDDcd002021.64E-12117158No hitNo description
Gene3DG3DSA:3.30.50.101.1E-12117157IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.4E-12117152IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEAAGTGCGA YDQVLLSFQG EIYVFDAVSP EKVQAVLLLL GESQVAATTD YVRPPQSPQA  60
TGDFPDRLNR PASRKRIRYS VRQEAARRMQ REKGRFTSSK PVSDEAGSSS ADWNEGCRHC  120
GISSKSTPQM RCGPAGPRSL CNACGLVWAK KGILRDLTEV PSPGAQDQTV KSCEQSDDEP  180
NGSDAMAAAP TIIQDGDNSL GSLTGLSKVP TPGAHNQSVK SGEKSNDEPN GSDTLAAAAI  240
STPYGDNPVV AAE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609389.12e-89PREDICTED: GATA transcription factor 28-like
SwissprotQ8GXL72e-50GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S4B0D67e-84A0A1S4B0D6_TOBAC; GATA transcription factor 24-like
TrEMBLA0A1U7X8557e-84A0A1U7X855_NICSY; GATA transcription factor 24-like
STRINGXP_009609389.16e-89(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2522622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-53ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]