PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00809g05031.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 407aa    MW: 44838.1 Da    PI: 9.0499
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00809g05031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-111944227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              +++ C+++ rtG C++G++C+F+H+p
  Peinf101Scf00809g05031.1 19 GEPDCSYYIRTGLCRFGSTCRFNHPP 44
                              6899********************97 PP
2zf-CCCH38.12.7e-126588326
                              S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                              ++ C+++++tG+Ck+G+ CkF+H+
  Peinf101Scf00809g05031.1 65 QPDCQYYLKTGICKFGAACKFHHP 88
                              789********************8 PP
3zf-CCCH37.54.1e-12112135427
                               ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                               ++C +++rtG+Ck+G++CkF+H++
  Peinf101Scf00809g05031.1 112 AECTYYLRTGQCKFGSTCKFHHPQ 135
                               58********************97 PP
4zf-CCCH36.77e-12267291327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               +++C+f+++tG Ck+G+ C+F+H++
  Peinf101Scf00809g05031.1 267 QPECQFYMKTGDCKFGAVCRFHHPR 291
                               799********************96 PP
5zf-CCCH29.81e-09312337227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +++lC f+ r+ +Ck+G++CkF H++
  Peinf101Scf00809g05031.1 312 GEPLCIFYTRYEICKFGPNCKFDHPM 337
                               689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4831745IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-51744IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-81944IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-52245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-42343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.226290IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-66289IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-96588IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-66690IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-46887IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6108136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018108136IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4110135IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10112135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4114134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911264292IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5264291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5267294IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8267291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5270292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.85310338IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4310337IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7312337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5314337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MNVRSRESME SGPYPIREGE PDCSYYIRTG LCRFGSTCRF NHPPNRKLVL AEASIKGEYP  60
ERIGQPDCQY YLKTGICKFG AACKFHHPGE KAGIAGRVSL NVLGYPLRMN DAECTYYLRT  120
GQCKFGSTCK FHHPQPSNMI VSLRGSPVYP PVASATTPGQ LAYPLSRASL FSATRWQGPS  180
SYAPLLVPQG AVTVPGFSYS GRVGSASSFE GQQQETAGNN QVYGSSRSCE KATMGWEGMN  240
SSYRVAPLPL GYYPIQRENL LPERVGQPEC QFYMKTGDCK FGAVCRFHHP RERLLPPLDC  300
LLSPIGLPLR SGEPLCIFYT RYEICKFGPN CKFDHPMGIF TYSISASSST DSPTIRHLWG  360
SSSGTNSLNL ASEGIVEAAS SKPRRLSLSE TRTMPPVKGE PLKIRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769498.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009769499.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009769500.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009769502.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U7W4E60.0A0A1U7W4E6_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGXP_009769498.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-152zinc finger protein 1