PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00816g08011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ZF-HD

Protein Properties

Length: 248aa MW: 27878 Da PI: 7.5542

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00816g08011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104	9.6e-33	50	107	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY+eClkNhA+ +Ggha+DGCg+fmp+ ge+gt++alkCaAC+CHRnFHR+eve e Peinf101Scf00816g08011.1 50 STVRYRECLKNHAVGIGGHATDGCGDFMPA-GEDGTMDALKCAACNCHRNFHRKEVEGE 107 689************************9.999*******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-22	52	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.1E-29	52	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.1E-30	53	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.856	54	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.38E-21	170	246	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-32	174	247	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.6E-26	185	241	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEFDEHEEHE EEIGIQNIPA VTGNNYQTQG NSVRVGSEEG LNSTGVRKSS TVRYRECLKN 60 HAVGIGGHAT DGCGDFMPAG EDGTMDALKC AACNCHRNFH RKEVEGEVVL HTPPPHLTHH 120 HQPHHTHHPQ FSPFSSYRTP HHPSGYLHVT PPPHQRPLAL PSTSREDEDM SNPSSSGGGG 180 VGSSRKRFRT KFTQEQKDKM LAFAERLGWR MQKQDEEAVQ QFCAETNVKR HVFKVWMHNN 240 KLTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-26	186	241	18	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU928132	9e-77	CU928132.3 S.lycopersicum DNA sequence from clone SL_MboI-49I21 on chromosome 4, complete sequence.
GenBank	HG975516	9e-77	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016501975.1	1e-112	PREDICTED: uncharacterized protein LOC107820239
Swissprot	Q6YXH5	2e-74	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1S4CLI1	1e-111	A0A1S4CLI1_TOBAC; uncharacterized protein LOC107820239
STRING	XP_009758154.1	1e-108	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-69	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]