PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00824g05007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 225aa    MW: 24555.6 Da    PI: 4.8175
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00824g05007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.89.1e-44681671100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lqq
  Peinf101Scf00824g05007.1  68 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGAICQLQQ 152
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q+++l+aela++++e
  Peinf101Scf00824g05007.1 153 QISELQAELAKAQAE 167
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.73867168IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4368165IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MECTSDKTNT TISSLSASSL INSSSNNYSS SPNSYPINIS SSTNSSGSIR STISTPPPSP  60
TVPVILTPCA ACKILRRRCV EKCVLAPYFP PTEPLKFTIA HRVFGASNII KMLQELPEEQ  120
RADAVNSMVY EANARIRDPV YGCAGAICQL QQQISELQAE LAKAQAEILN VQCQNSNLLA  180
LVCMEVSDRE NSSSLFPSDH HDYGNNNSLF LEDNSVYGAW EPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-45591732116LOB family transfactor Ramosa2.1
5ly0_B1e-45591732116LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-46HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755172e-46HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253003.11e-108PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR05e-73LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1J6I4S11e-107A0A1J6I4S1_NICAT; Lob domain-containing protein 1
STRINGXP_009611728.11e-103(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-64LOB domain-containing protein 1