PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00832g03013.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

TCP

Protein Properties

Length: 356aa MW: 38673.7 Da PI: 7.3593

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00832g03013.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.3e-38	26	123	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ s+s+ss Peinf101Scf00832g03013.1 26 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFSTVSVSVRSNSSSS 110 689******************************************************************8884444444444333 PP TCP 87 sgkaaksaakskk 99 +++ ++ +k+ Peinf101Scf00832g03013.1 111 MNSSVAAPLDHKP 123 3322222223322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.613	32	86	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.7E-34	33	137	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MSTSTEGNGP IINQQQQQST TNGVLTVKKP PVKDRHSKVD GRGRRIRMPI VCAARVFQLT 60 RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TIPASFSTVS VSVRSNSSSS MNSSVAAPLD 120 HKPLQHHLIS PAPFILGKRL RSDDDDHESL ENGTSKEDSA VSVVGPPGPT TGFWAVPARP 180 DFGQVWSFAA AAPSDMMAPA SAAGLSLQSS RFFQQQMGEA SAARVDAASS DTPLIIGIDE 240 ILMLRDSGQL SSSSLETRPT GYCHGDLHCI SVMESVIFLP FLDEESEDPT SRKSIHLNPN 300 GLSRCSHFLA DPSCKRCEGY HLTIFLQSRV HYVRFIKYVK VSIKPWNYDL QSVVGM

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MSTSTEGNGP IINQQQQQST TNGVLTVKKP PVKDRHSKVD GRGRRIRMPI VCAARVFQLT  60
RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TIPASFSTVS VSVRSNSSSS MNSSVAAPLD  120
HKPLQHHLIS PAPFILGKRL RSDDDDHESL ENGTSKEDSA VSVVGPPGPT TGFWAVPARP  180
DFGQVWSFAA AAPSDMMAPA SAAGLSLQSS RFFQQQMGEA SAARVDAASS DTPLIIGIDE  240
ILMLRDSGQL SSSSLETRPT GYCHGDLHCI SVMESVIFLP FLDEESEDPT SRKSIHLNPN  300
GLSRCSHFLA DPSCKRCEGY HLTIFLQSRV HYVRFIKYVK VSIKPWNYDL QSVVGM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001293140.1	1e-106	TCP transcription factor 14
Swissprot	Q9FMX2	2e-72	TCP7_ARATH; Transcription factor TCP7
TrEMBL	G3BGV4	1e-104	G3BGV4_SOLLC; TCP transcription factor 14
STRING	Solyc04g009180.1.1	1e-105	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-60	TCP family protein