PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00887g01035.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 359aa MW: 39270.6 Da PI: 4.9156

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00887g01035.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.3e-05	148	169	34	55
TTS-STCHHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksLq 55 ++ +Ka++L +A+eY+k+Lq Peinf101Scf00887g01035.1 148 RAAETDKASMLDEAIEYLKQLQ 169 566789***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-6	148	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-6	150	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.26E-4	152	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MANNNMYHHN ASSSFSWTEP DHEPDDISVF VRQILRPSSS SSSNFMNMKG SEMQYSSSLP 60 NLLSKNQHGL ESCSMLNTSS GNILSSFSGA YNIPTGVVNV CSSSVGTMDN DLDEYECESE 120 GGTEDFVVEA SGQQPSSSSS RNSSKRSRAA ETDKASMLDE AIEYLKQLQL QVQMLTMKNG 180 LFPLGLPRVL QQNQLSQQRM GLCEGDGFMK DNVASALHVN QDTSLKAIFS PSNNCTETKL 240 TPVATMANVN LHNAFESESS INTHLDPFQL SRNSKIKILA YILTSFAFDP GAHVASLAPF 300 DTNASNLKSN TLEACLHRYQ LGALNETNMD CDQLLAPHLY SHVGRSTSVD IIKNECSNF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MANNNMYHHN ASSSFSWTEP DHEPDDISVF VRQILRPSSS SSSNFMNMKG SEMQYSSSLP  60
NLLSKNQHGL ESCSMLNTSS GNILSSFSGA YNIPTGVVNV CSSSVGTMDN DLDEYECESE  120
GGTEDFVVEA SGQQPSSSSS RNSSKRSRAA ETDKASMLDE AIEYLKQLQL QVQMLTMKNG  180
LFPLGLPRVL QQNQLSQQRM GLCEGDGFMK DNVASALHVN QDTSLKAIFS PSNNCTETKL  240
TPVATMANVN LHNAFESESS INTHLDPFQL SRNSKIKILA YILTSFAFDP GAHVASLAPF  300
DTNASNLKSN TLEACLHRYQ LGALNETNMD CDQLLAPHLY SHVGRSTSVD IIKNECSNF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783822.1	1e-149	PREDICTED: transcription factor SPATULA-like isoform X1
Refseq	XP_016464627.1	1e-149	PREDICTED: transcription factor SPATULA-like isoform X1
TrEMBL	A0A1S3ZJV8	1e-148	A0A1S3ZJV8_TOBAC; transcription factor SPATULA-like isoform X1
TrEMBL	A0A1U7WV93	1e-148	A0A1U7WV93_NICSY; transcription factor SPATULA-like isoform X1
STRING	XP_009783822.1	1e-149	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9850	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	7e-17	bHLH family protein