PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00889g02030.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 255aa    MW: 28999.8 Da    PI: 9.3362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00889g02030.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.4e-50171421128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+++d++k++PwdLp      e+e yfFs+++ kya+g+r+nrat+sgyWka
  Peinf101Scf00889g02030.1  17 LPPGFRFHPTDEELVVQYLKRKVFSCPLPA-SIIPDIDVHKSDPWDLPGD---LEQERYFFSTKEVKYANGSRSNRATNSGYWKA 97 
                               79****************************.89***************54...46799*************************** PP

                       NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg dk+++s+  +++ vg+kktLvfykg+  +g +tdW+mheyrl
  Peinf101Scf00889g02030.1  98 TGLDKQIVSSrgQQQIVGMKKTLVFYKGKPLHGCRTDWIMHEYRL 142
                               *********9656666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-5912169IPR003441NAC domain
PROSITE profilePS5100556.81217169IPR003441NAC domain
PfamPF023654.4E-2718142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGIEKKISFV KNGVLRLPPG FRFHPTDEEL VVQYLKRKVF SCPLPASIIP DIDVHKSDPW  60
DLPGDLEQER YFFSTKEVKY ANGSRSNRAT NSGYWKATGL DKQIVSSRGQ QQIVGMKKTL  120
VFYKGKPLHG CRTDWIMHEY RLANLESNPP QLNNIPVQEN WVLCRIFLKK RGSKNEDENM  180
TQVLNNTSSR AAAGNNKLVF YDFMARERRD LNSSSVSAGS SGITELSTNE SEDHEESSSC  240
NSFITSVRRK NMALE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-5011704166NO APICAL MERISTEM PROTEIN
1ut4_B7e-5011704166NO APICAL MERISTEM PROTEIN
1ut7_A7e-5011704166NO APICAL MERISTEM PROTEIN
1ut7_B7e-5011704166NO APICAL MERISTEM PROTEIN
3swm_A7e-5011707169NAC domain-containing protein 19
3swm_B7e-5011707169NAC domain-containing protein 19
3swm_C7e-5011707169NAC domain-containing protein 19
3swm_D7e-5011707169NAC domain-containing protein 19
3swp_A7e-5011707169NAC domain-containing protein 19
3swp_B7e-5011707169NAC domain-containing protein 19
3swp_C7e-5011707169NAC domain-containing protein 19
3swp_D7e-5011707169NAC domain-containing protein 19
4dul_A7e-5011704166NAC domain-containing protein 19
4dul_B7e-5011704166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5102181e-173AF510218.1 Petunia x hybrida nam-like protein 22 (NH22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600037.11e-139PREDICTED: NAC domain-containing protein 83-like
RefseqXP_018626075.11e-139PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY933e-91NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1S4CIT01e-137A0A1S4CIT0_TOBAC; NAC domain-containing protein 83-like
TrEMBLA0A1U7YR911e-137A0A1U7YR91_NICSY; NAC domain-containing protein 18-like
TrEMBLA0A314KYP51e-137A0A314KYP5_NICAT; Nac domain-containing protein 83
STRINGXP_009600037.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-93NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]