PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00889g04005.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

M-type_MADS

Protein Properties

Length: 95aa MW: 10797.5 Da PI: 10.7792

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00889g04005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.2	6.1e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rq tfskRr g++KKA+ LS+LCd++va i+fss+g+l+ +ss Peinf101Scf00889g04005.1 9 KRIEDKSSRQATFSKRRGGLMKKAKHLSILCDVDVAAIVFSSRGRLFQFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.9E-35	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.464	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.20E-32	2	65	No hit	No description
SuperFamily	SSF55455	3.27E-27	2	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MGRKKVEIKR IEDKSSRQAT FSKRRGGLMK KAKHLSILCD VDVAAIVFSS RGRLFQFSSP 60 NSGKLGTENF VDVTYKVYRK QSFEGCITNR LEASY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-20	1	65	1	65	MEF2C
5f28_B	3e-20	1	65	1	65	MEF2C
5f28_C	3e-20	1	65	1	65	MEF2C
5f28_D	3e-20	1	65	1	65	MEF2C
6bz1_A	3e-20	1	65	1	65	MEF2 CHIMERA
6bz1_B	3e-20	1	65	1	65	MEF2 CHIMERA
6bz1_C	3e-20	1	65	1	65	MEF2 CHIMERA
6bz1_D	3e-20	1	65	1	65	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352169.1	5e-32	PREDICTED: agamous-like MADS-box protein AGL27
Swissprot	Q8RU31	1e-23	MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBL	A0A0V0HZX3	1e-30	A0A0V0HZX3_SOLCH; Putative agamous-like MADS-box protein AGL27-like
STRING	Solyc05g015730.1.1	8e-31	(Solanum lycopersicum)
STRING	XP_009790268.1	1e-30	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65070.1	1e-24	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dreni L, et al. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J., 2007. 52(4): p. 690-9 [PMID:17877710]