PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00889g07002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NF-YC

Protein Properties

Length: 145aa MW: 16038.4 Da PI: 9.7358

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00889g07002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.2	7.8e-18	18	106	10	97
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflv 93 +e + + ++ ++P++r+kk++k ded++++ +ea l++++ elf+ l+ +s a e+kr+++k i av+r + + dfl+ Peinf101Scf00889g07002.1 18 VEVTGEAHQLQIPISRVKKLMKLDEDINKVNSEALHLIANSTELFVEFLAEKSAKVAVEKKRKSIKVEHIRVAVKRHQpMSDFLL 102 6778888999***************************************************************987367** PP NF-YC 94 divp 97 d p Peinf101Scf00889g07002.1 103 DSLP 106 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.55E-19	17	94	IPR009072	Histone-fold
Pfam	PF00808	1.7E-19	28	91	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.0E-20	30	106	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MAGEDQPESS TAAASAAVEV TGEAHQLQIP ISRVKKLMKL DEDINKVNSE ALHLIANSTE 60 LFVEFLAEKS AKVAVEKKRK SIKVEHIRVA VKRHQPMSDF LLDSLPLPSQ PSDPSPKVQN 120 RPRLSTDKPV PSGTRRIEAF FQKCT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786327.1	5e-78	PREDICTED: nuclear transcription factor Y subunit C-1
Refseq	XP_016460645.1	5e-78	PREDICTED: nuclear transcription factor Y subunit C-1-like
TrEMBL	A0A0V0H358	1e-77	A0A0V0H358_SOLCH; Putative chromatin accessibility complex protein 1-like (Fragment)
TrEMBL	M1CU91	1e-77	M1CU91_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400074841	2e-78	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11435	24	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	7e-25	nuclear factor Y, subunit C13