PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00898g01016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 507aa    MW: 55393.9 Da    PI: 7.3242
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00898g01016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.18.8e-34233289259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Peinf101Scf00898g01016.1 233 DDGYNWRKYGQKQVKGSEYPRSYYKCTHTNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 289
                               8****************************************.***************8 PP
2WRKY105.23.5e-33395453159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+H h+
  Peinf101Scf00898g01016.1 395 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHSHD 453
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-30226291IPR003657WRKY domain
PROSITE profilePS5081124.065227291IPR003657WRKY domain
SuperFamilySSF1182901.44E-26230291IPR003657WRKY domain
SMARTSM007748.7E-38232290IPR003657WRKY domain
PfamPF031067.2E-26233289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-37380455IPR003657WRKY domain
SuperFamilySSF1182901.44E-29387455IPR003657WRKY domain
PROSITE profilePS5081138.618390455IPR003657WRKY domain
SMARTSM007742.2E-39395454IPR003657WRKY domain
PfamPF031066.6E-26396453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MADNEGSSSS SSSSRTPLLR PTITLPSRNS IETLFTGALS SGISPGPMTL VSSFFNDNDP  60
DSDCRSFSQL LAGAMSSPAG FPPPSTAGKD SGEFRFKENR PTGLVISQSS NTFTVPPGLS  120
PASLLDSPGF FSPGQGPFGM SHQQVLAQLT AQAAQPQSQM GHSQMHIQPD YPSSSAPPAP  180
SLPQFQSFTS NVAVNQPRAP PASDPTIVRE SSDISLSDQR SEPASIAVDK PADDGYNWRK  240
YGQKQVKGSE YPRSYYKCTH TNCPVKKKVE RSLDGQVTEI IYKGQHNHQP PQSSKRSKDN  300
GNPNGNYNLQ GPYESKEGEP SYSLSMKDQE SSQISGSSDS EEVGDAETRV DGRDSDERES  360
KRRAVEVQTS EAACSHRTVT EPRIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPYPRSYYK  420
CTSQGCNVRK HVERAASDPK AVITTYEGKH SHDVPAARNS SHSTANSMSQ LRPQNSVVDK  480
PTAMRRTDFQ NNEQPITLLR FKEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-41233456878Probable WRKY transcription factor 4
2lex_A2e-41233456878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794188.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9ZQ701e-170WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1U7XTB80.0A0A1U7XTB8_NICSY; probable WRKY transcription factor 4
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-135WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]