PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00914g03017.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ZF-HD

Protein Properties

Length: 304aa MW: 34162.8 Da PI: 7.9614

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00914g03017.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.6	5.5e-32	75	132	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + vrYkeClkNhAa++Gg+a+DGCgEfmps geegt +al C+AC+CHRnFHR+e e e Peinf101Scf00914g03017.1 75 KMVRYKECLKNHAATMGGNATDGCGEFMPS-GEEGTLEALICSACNCHRNFHRKEIEGE 132 679************************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.9E-29	77	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-25	77	132	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.8E-31	78	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.278	79	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.3E-30	222	291	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.02E-18	223	290	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.7E-27	229	285	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MELPNQEDEM PLPINSTYVG GVHQHGHGHI IHHDPTPPNS TTNHIIPSSV APPSMNGPPI 60 DAAPVASDHH LPYKKMVRYK ECLKNHAATM GGNATDGCGE FMPSGEEGTL EALICSACNC 120 HRNFHRKEIE GEQQLLQQQS LPSPCDYYHL NRVGKKVYLG SHHHKSLLGP EPFGTIIPSR 180 PAPHQMIMSY NMGSLPNSES EEHEDGHANG GVMSMAMARP IHHHHQNVKK RFRTKFTQEQ 240 KEKMLNFAEK VGWKIQKQEE AVVQQFCQEV GVKRRVLKVW MHNNKHNLAK KNNDSNNIIP 300 ISQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-24	230	287	18	75	ZF-HD homeobox family protein
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	2e-59	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	2e-59	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613099.1	1e-163	PREDICTED: zinc-finger homeodomain protein 4
Refseq	XP_016501840.1	1e-163	PREDICTED: zinc-finger homeodomain protein 4-like
Refseq	XP_016501841.1	1e-163	PREDICTED: zinc-finger homeodomain protein 4-like
Refseq	XP_018629726.1	1e-163	PREDICTED: zinc-finger homeodomain protein 4
TrEMBL	A0A1S4CL46	1e-162	A0A1S4CL46_TOBAC; zinc-finger homeodomain protein 4-like
STRING	XP_009613099.1	1e-162	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5154	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	2e-69	homeobox protein 31