PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00920g02019.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 750aa MW: 86085.7 Da PI: 6.3735

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00920g02019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.3	9.6e-27	94	196	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekd 73 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +ra +t+Cka+++vk++ d Peinf101Scf00920g02019.1 94 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSanrprsrqgnkqdPENATGRRACAKTDCKASMHVKRRPD 178 9*************************************999999899999888776555556699************** PP FAR1 74 gkwevtkleleHnHelap 91 gkw ++++e+eHnHel p Peinf101Scf00920g02019.1 179 GKWLIHRFEKEHNHELLP 196 *************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-24	94	196	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.409	472	508	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.0E-6	483	510	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010218	Biological Process	response to far red light
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MDIDLRLPSR DHDKEEEEEE EEEQNGIINM LDNEEKLHSD EGMHGMLVVE EKMHAEDGED 60 MDNPITNMIE FKEDVNLEPL AGMEFESHGE AYAFYQEYAR SMGFNTAIQN SRRSKTSREF 120 IDAKFACSRY GTKREYEKSA NRPRSRQGNK QDPENATGRR ACAKTDCKAS MHVKRRPDGK 180 WLIHRFEKEH NHELLPAQAV SEQTRRMYAA MARQFAEYKN VVGLKSDAKG PFDKARNSAM 240 EGGDINVLLE FFIQMQALNS NFFYAVDVEA LPSSLHYFCM WHILGKVSEK LNHVIKQNEK 300 FMAKFEKCIY RSWTDEEFEK RWRKLVDRFD LREADLIRSL YEDRAKWAPT FMRDAFLAGM 360 STVQRSESVN SFIDKYVHKK TTVQEFVKQY ESILQDRYEE EAKADSDTWN KQPALKSPSP 420 FEKHVAGLYT HAVFKKFQGE VLGAVACIPK REKQDETTIT FRVQDFEKDQ EFIVTLNEVK 480 SEVSCICHLF ELKGYLCRHT LIVLQICGVS SIPSQYILKR WTKDAKSKYS VSDGSEDVQS 540 RVHRYNELCQ RAMKLSEEGS LSQESFSFAL RALDDAFGSC VTFNNSNKNM LEAGTSAAPG 600 LLCVEDDNQS RSMSKTNKKK NNFTKKRKVN SEADVMTVGA ADNLQQMDKL NSRPVTLDGY 660 FGAQQGVQGM VQLNLMAPTR DNYYGNQQTI QGLGQLNSIA PTHDGYYGAQ PAMHGLGQMD 720 FFRAPSFPYG IRDEPNVRSA QLHDESSRHP

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MDIDLRLPSR DHDKEEEEEE EEEQNGIINM LDNEEKLHSD EGMHGMLVVE EKMHAEDGED  60
MDNPITNMIE FKEDVNLEPL AGMEFESHGE AYAFYQEYAR SMGFNTAIQN SRRSKTSREF  120
IDAKFACSRY GTKREYEKSA NRPRSRQGNK QDPENATGRR ACAKTDCKAS MHVKRRPDGK  180
WLIHRFEKEH NHELLPAQAV SEQTRRMYAA MARQFAEYKN VVGLKSDAKG PFDKARNSAM  240
EGGDINVLLE FFIQMQALNS NFFYAVDVEA LPSSLHYFCM WHILGKVSEK LNHVIKQNEK  300
FMAKFEKCIY RSWTDEEFEK RWRKLVDRFD LREADLIRSL YEDRAKWAPT FMRDAFLAGM  360
STVQRSESVN SFIDKYVHKK TTVQEFVKQY ESILQDRYEE EAKADSDTWN KQPALKSPSP  420
FEKHVAGLYT HAVFKKFQGE VLGAVACIPK REKQDETTIT FRVQDFEKDQ EFIVTLNEVK  480
SEVSCICHLF ELKGYLCRHT LIVLQICGVS SIPSQYILKR WTKDAKSKYS VSDGSEDVQS  540
RVHRYNELCQ RAMKLSEEGS LSQESFSFAL RALDDAFGSC VTFNNSNKNM LEAGTSAAPG  600
LLCVEDDNQS RSMSKTNKKK NNFTKKRKVN SEADVMTVGA ADNLQQMDKL NSRPVTLDGY  660
FGAQQGVQGM VQLNLMAPTR DNYYGNQQTI QGLGQLNSIA PTHDGYYGAQ PAMHGLGQMD  720
FFRAPSFPYG IRDEPNVRSA QLHDESSRHP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00078	ChIP-seq	Transfer from AT3G22170	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013715	0.0	BT013715.1 Lycopersicon esculentum clone 132560F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019230455.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A1R3IYV4	0.0	A0A1R3IYV4_9ROSI; Uncharacterized protein
STRING	XP_009804946.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]