PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00923g03009.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WRKY

Protein Properties

Length: 539aa MW: 60169.6 Da PI: 7.0482

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00923g03009.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.1e-30	305	363	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg+ WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Peinf101Scf00923g03009.1 305 SDGCLWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDMTILITTYEGTHNHP 363 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.9E-33	289	365	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-27	297	365	IPR003657	WRKY domain
PROSITE profile	PS50811	29.654	299	365	IPR003657	WRKY domain
SMART	SM00774	2.6E-36	304	364	IPR003657	WRKY domain
Pfam	PF03106	6.1E-26	306	363	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MDKGWGLTLE NSDHQVNFFK NKPVFGFNLS PRLNHMNMNR REEQDAFPQA DEKRVIVNEL 60 DFFSEKRIKP VDVVIKKEDY SHGENITNTR SQFVVNTGLR LVTANDGSDQ STLDDGISSE 120 LEDKRAKNEL AQLQVELERM NAENQRLKEL LTQVSNNYAA LQMHLVTLMQ NQQQQQQQQI 180 PRTESTHHNH EIVEANSEEK KHENDGTIVP RKYLDLGPSG TATSDIHMDE PFSSEERTIS 240 VSPRNNNMEG IRQKGREESP DSESWVPNKV PKLNSSKPVD QTTVEASMRK ARVSVRARSE 300 ASMISDGCLW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRCAEDMT ILITTYEGTH 360 NHPLPPTAMA MASTTSAAAN MLLSGPMQSA DGLMYPNFLA RNIFPCSSNM ATISASAPFP 420 TITLDLTQKQ NALSSYHHQR SHPATQFQVP FPIGPQHPNL ITSMPPPQMP QVLHNQSKFS 480 GLQVSQEFHQ PQIQLQHVQS HPSFSDTLTA ATAAITADPN FTAALAAAIS SIIGGSQQK

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MDKGWGLTLE NSDHQVNFFK NKPVFGFNLS PRLNHMNMNR REEQDAFPQA DEKRVIVNEL  60
DFFSEKRIKP VDVVIKKEDY SHGENITNTR SQFVVNTGLR LVTANDGSDQ STLDDGISSE  120
LEDKRAKNEL AQLQVELERM NAENQRLKEL LTQVSNNYAA LQMHLVTLMQ NQQQQQQQQI  180
PRTESTHHNH EIVEANSEEK KHENDGTIVP RKYLDLGPSG TATSDIHMDE PFSSEERTIS  240
VSPRNNNMEG IRQKGREESP DSESWVPNKV PKLNSSKPVD QTTVEASMRK ARVSVRARSE  300
ASMISDGCLW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRCAEDMT ILITTYEGTH  360
NHPLPPTAMA MASTTSAAAN MLLSGPMQSA DGLMYPNFLA RNIFPCSSNM ATISASAPFP  420
TITLDLTQKQ NALSSYHHQR SHPATQFQVP FPIGPQHPNL ITSMPPPQMP QVLHNQSKFS  480
GLQVSQEFHQ PQIQLQHVQS HPSFSDTLTA ATAAITADPN FTAALAAAIS SIIGGSQQK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	291	366	1	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776126.1	0.0	PREDICTED: WRKY transcription factor 6-like
Swissprot	Q9C519	1e-144	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A1U7WFU6	0.0	A0A1U7WFU6_NICSY; WRKY transcription factor 6-like
STRING	XP_009776126.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA945	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-123	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]