PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00925g19016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 101aa    MW: 11635.4 Da    PI: 9.7975
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00925g19016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17392799
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                        B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92
                              +s+v++   l +  +fa++  ++ +    ltl+ +   sW vk+   ++++   +++GWk Fv +n+Lk gD++vF++++  ++ + 
  Peinf101Scf00925g19016.1  3 QSYVSEPYTLPIKMTFAKKVFEE-NF-SYLTLRVQGRGSWPVKC--YRGKSFARISTGWKAFVFDNKLKRGDVCVFEVIKGtDQLNI 85
                              78999999999999***999544.23.3899*************..88888999***********************9977699999 PP

                              EEEEE-S CS
                        B3 93 vvkvfrk 99
                               v++fr+
  Peinf101Scf00925g19016.1 86 DVTIFRE 92
                              9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.6E-4193IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-19192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-17191IPR015300DNA-binding pseudobarrel domain
CDDcd100172.92E-14191No hitNo description
PfamPF023622.3E-14392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MQQSYVSEPY TLPIKMTFAK KVFEENFSYL TLRVQGRGSW PVKCYRGKSF ARISTGWKAF  60
VFDNKLKRGD VCVFEVIKGT DQLNIDVTIF REAGNTPMHA D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230738.17e-33PREDICTED: uncharacterized protein LOC109211634 isoform X2
TrEMBLA0A1J6IMU62e-31A0A1J6IMU6_NICAT; B3 domain-containing transcription factor vrn1
STRINGXP_009760928.13e-31(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-11related to vernalization1 1